New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1487006 = | 44 (0.900) | 7 (0.190) | 7/202 | NT | 20.3% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
? | NC_002947 | 1487096 = | 21 (0.560) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
TACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTG > NC_002947/1486858‑1487148 | tACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAg < 7:125153/149‑1 (MQ=255) gcgcggatcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGccc > 6:150283‑M1/145‑148 (MQ=255) gcggatcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaaccaagggccgcaacgcgGCcctgg < 1:223038‑M1/7‑3 (MQ=255) gCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTcg < 2:71031/149‑1 (MQ=255) gCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCCGCGCAGcccaaa < 1:36822/148‑4 (MQ=255) gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTcgcg < 6:220179/149‑1 (MQ=255) tcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCggg > 3:142516‑M1/138‑149 (MQ=255) ccGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGc < 8:104776/149‑1 (MQ=255) gcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACg < 5:275755‑M1/16‑1 (MQ=255) gcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACg < 8:229018‑M1/16‑1 (MQ=255) caacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGccc < 6:202060‑M1/19‑1 (MQ=255) gagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTc > 7:207648‑M1/127‑149 (MQ=255) cATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCGTGCCCGcgaa < 5:75562/148‑4 (MQ=255) cATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCAccc > 4:46990/1‑149 (MQ=255) taCAAGGGCGAGATTGTGGAGCATGCAGCGCAGTATGACTTCTTCGACCGTCCGAGCAGTGACAGGACCAAGTTGTTCCTCAGCCAGATCCTGCAATGATGCTGTTTGGGA‑TGCGCGGCAGCCCTACGCGTGCACGCCCGCTcaca > 8:104603/2‑146 (MQ=255) gggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGtt > 3:290935/1‑147 (MQ=255) ggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg < 2:92451/149‑1 (MQ=255) gaTTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg < 7:60113/144‑1 (MQ=255) gaTTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg > 8:60113/1‑144 (MQ=255) ccGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGc < 5:260672/149‑1 (MQ=255) cgcgCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCg > 2:114294/1‑149 (MQ=255) ggAAGACTTCTTCGACCGTCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCATGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACTCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTc < 7:104603/149‑1 (MQ=255) tGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtg < 1:114294/149‑1 (MQ=255) gACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtg < 2:286736/148‑1 (MQ=255) gACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtg > 1:286736/1‑148 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgt < 1:176155/148‑1 (MQ=255) cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgtg < 7:206133/148‑1 (MQ=255) cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgtg > 8:206133/1‑148 (MQ=255) gctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTgg > 5:98599‑M1/83‑149 (MQ=255) ctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgtg < 1:198908‑M1/66‑1 (MQ=255) ctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgtg > 2:198908‑M1/82‑147 (MQ=255) ttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGc > 3:227230/1‑149 (MQ=255) atcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcaGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGa > 4:137309‑M1/79‑147 (MQ=255) gACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCgg < 6:356/148‑1 (MQ=255) ggCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTg > 8:54831/1‑149 (MQ=255) gCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACCCCCCCACCCACAGGTTTAGCGCTGGGGTTGG‑AGGCGGGGTAATTACGGTGGGCGCgggggggc > 1:289682/1‑144 (MQ=255) cgcgCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGccc < 4:227230/149‑1 (MQ=255) cGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGt < 5:134879/134‑1 (MQ=255) cGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGt > 6:134879/1‑134 (MQ=255) cGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGAGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCg > 3:237277/1‑149 (MQ=255) aCCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGccc < 1:119714/135‑1 (MQ=255) aCCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCGCCCCCAGGTTTTGCGGGGGGGTTGG‑GGGCGGCGGAATTGCGGGGGGGGCGGGGGGGCCCGAGATggggagagg > 2:119714/1‑143 (MQ=255) gttgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCCCCCCCCCAACCCCCGGGTTTGCGGGGGCGTTGG‑GGCCTGGGTAATTGAGGGGGGGGCGGGCGGGCCCGCGAACGGCCGCACAGCgg > 8:239692/1‑149 (MQ=255) ccTCACCCCGATCCTGCTTTCTTG‑TTTTTGGGCGTGCGGGCCCGCCTTTCGCGGCCCCCCCGGCTCCCACTGTTTTCGCG‑GGGCTTTGGTCGCGTGGTTATTTCCTGGGGTTGGGGGGGTGCCCGCGAAGGGCCGCAACGCGGCCCTgg < 4:8988/149‑1 (MQ=255) tCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCCCGCCCCCGACCACAGGTTTTGCGCTGGGGTTGG‑GGCCGGCGGAATTGCTGGGGGTGCGGGGGTGCCCGCGAAGGGGCGCAACCCGGGCCTgggg > 1:127787/1‑148 (MQ=255) aGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgt > 4:303305/1‑100 (MQ=255) aGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgt < 3:303305/100‑1 (MQ=255) aggaagagaaataaacccagggccgcgttgcgGCCCTTCGTGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgt < 4:291963‑M1/65‑1 (MQ=255) aggaagagaaataaacccagggccgcgttgcgGCCCTTCGTGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCtgt > 3:291963‑M1/33‑97 (MQ=255) ctccATTGATGCTGTTTGGGA‑GTCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTctct < 4:237277/145‑1 (MQ=38) gagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCACTGGCTTTGG‑AGGCTGCGTAATTGCTTTGGGAGCGGGCGTGCccgg < 4:94039‑M1/83‑2 (MQ=255) gATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGc < 6:228318/98‑1 (MQ=255) gATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGc > 5:228318/1‑98 (MQ=255) caggCTGTTTGGGC‑TGCGCGGCAGCCCTGCGCGGGCACGCCCGCTCCCACTGGTTTAGCGCGGGCTTTGG‑AGCCGGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggc < 3:46990/145‑1 (MQ=38) aTGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACCCCCCCTCCCACAGGTTTAGCCCTGGCTTTGG‑AGCCTGCGTAAATACAGTGGGAGCGGGCCTGCCCGCCAAAGGCCGCAACCCGGCCCAGGGTTTATTTCTATTCctggctg > 8:72023/1‑149 (MQ=255) tGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggctgg < 7:72023/149‑1 (MQ=255) tttGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCACCCACAGGTTTAGCGCAGGCTTTGG‑AGCCTGCGTAATTCCAGTGGGAGCGGGCGTGCCCGCGAAGGGCCCCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGcc > 8:122907/1‑149 (MQ=255) gttGGCC‑GGCGCGCCAGCCCTCCGCGGCCCCGCCCGCTCCCACAGGTTTCGCGCTGGCTTGGC‑AGCCGGCGTAATTCCTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGcc < 8:239191/148‑1 (MQ=37) gggC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCgg < 7:54831/148‑1 (MQ=255) gcgGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTg < 4:290935/149‑1 (MQ=255) | TACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTG > NC_002947/1486858‑1487148 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |