| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1578505 = | 56 (1.140) | 3 (0.060) | 3/254 | NT | 5.4% | coding (2892/3153 nt) | ttgB | efflux pump membrane protein TtgB |
| ? | NC_002947 | 1578560 = | 50 (1.050) | coding (2837/3153 nt) | ttgB | efflux pump membrane protein TtgB | |||||
CCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCTGGTTGGCCTGTTGACCACCATCGGTCTTGCGGCGAAAAACGCCATTCTGATCGTGGAATTCGCCAAGGAGCTGCACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1578656‑1578505‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATACCCAGCGGTACTACCAGCACCAC > NC_002947/1578560‑1578702 CCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCTGGTTGGCCTGTTGACCACCATCGGTCTTGCGGCGAAAAACGCCATTCTGATCGTGGAATTCGCCAAGGAGCTGTACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAG > 2:246831/1‑149 CGTGGAATTCGCCAAGGAGCTGCACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACATGCCAACCAGGAAGTACACGTCGTTGGACAGGC > 3:104002/1‑149 TTCGCCAAGGAGCTGCACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAG > 4:298748/1‑149 AGGAGCTGCACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTG < 3:298748/149‑1 ATCGAGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACATGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATACCCAGCGGTACTACCAGCAC < 4:104002/149‑1 GGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATGCCCAGCGGTACTACCAGCACCAC < 8:188153/147‑1 CGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCC < 5:125760/88‑1 CGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCC > 6:125760/1‑88 GAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATACCCA > 5:271101/1‑125 GAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATACCCA < 6:271101/125‑1 CCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCTGGTTGGCCTGTTGACCACCATCGGTCTTGCGGCGAAAAACGCCATTCTGATCGTGGAATTCGCCAAGGAGCTGCACGAACAAGGCCGCAGCCTGTACGACGCAGCGATCGAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1578656‑1578505‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTCGTTGGACAGGCCGCGCAGGCTGGTGGCGATCAGCGCACCGATGATACCCAGCGGTACTACCAGCACCAC > NC_002947/1578560‑1578702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |