New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1824801 =	34 (0.690)	4 (0.090)	4/246	NT	11.0%	coding (453/2574 nt)	mutS	DNA mismatch repair protein MutS
	?	NC_002947	1824867 =	33 (0.720)					coding (387/2574 nt)	mutS	DNA mismatch repair protein MutS

GCCCGGTGGAGCGCCAGGTGGTGCGCATCATCACCCCGGGTACGGTCAGTGACGAGGCACTGCTCGACGAGCGCCGCGACAACCTGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1824952‑1824801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  NC_002947/1824867‑1825013                                                                                                                                                                                                                                                                                                             GCCCGGTTGAGCGCCAGGTGGTGCGCATCATCACCCCGGGTACGGTCAGTGACGAGGCACTGCTCGACGAGCGCCGCGACAACCTGATTGCCGCCCTGCTCTGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGC                                                                                                                                                        <  1:64903/149‑1                                 ACCCCGGGTACGGTCAGTGACGCGGCACTGCTCGACGAGCGCCGCGACAACCTGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCG                                                                                                                                                          >  7:47418/1‑115                                 ACCCCGGGTACGGTCAGTGACGAGGCACTGCTCGACGAGCGCCGCGACAACCTGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCG                                                                                                                                                          <  8:47418/115‑1                                                                                    CTGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCA                                                                     >  7:274022/1‑149                                                                                     TGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCA                                                                                 >  5:90005/1‑136                                                                                     TGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCA                                                                                 <  6:90005/136‑1                                                                                                          ACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGG                                               <  8:274022/149‑1                                                                                                                                                  CGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGC       <  7:30731/149‑1                                                                                                                                                     CAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTT     <  3:36929/148‑1                                                                                                                                                     CAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTT     >  4:36929/1‑148                                                                                                                                                      AATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGc   >  4:63028/1‑148                                                                                                                                                       ATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  3:36642/1‑149                                                                                                                                                       ATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCA                               >  6:126109/1‑120                                                                                                                                                        TCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  4:299863/1‑148                                                                                                                                                                                                                                                                                                             GCCCGGTGGAGCGCCAGGTGGTGCGCATCATCACCCCGGGTACGGTCAGTGACGAGGCACTGCTCGACGAGCGCCGCGACAACCTGATTGCCGCCCTGCTCGGTGACGAGCGCCTGTTCGGCCTGGCGGTACTGGACATCACCAGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1824952‑1824801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  NC_002947/1824867‑1825013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.