New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1824801 =	34 (0.690)	4 (0.090)	4/246	NT	11.0%	coding (453/2574 nt)	mutS	DNA mismatch repair protein MutS
	?	NC_002947	1824867 =	33 (0.720)					coding (387/2574 nt)	mutS	DNA mismatch repair protein MutS

GGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  NC_002947/1824721‑1825013                                                                                                                                                   |                                                                                                                                                   tggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                                                                                                  >  7:274022‑M1/81‑149 (MQ=255) gggATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                                                                                                  >  4:138660/1‑149 (MQ=255) gggATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGACGCTGGTGATGTCCAGTACAGCCAGGCCGAACATGCGCTCGTCACCGAGAAGGGCGGCAATCAg                                                                                                                                                  >  3:185836/1‑149 (MQ=255)      cAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGt                                                                                                                                             >  8:30731/1‑149 (MQ=255)         cAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTcgc                                                                                                                                          >  4:226249/1‑149 (MQ=255)             tggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCa                                                                                                                                                   <  6:90005‑M1/68‑1 (MQ=255)             tggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCa                                                                                                                                                   >  5:90005‑M1/69‑136 (MQ=255)                  cGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgt                                                                                                                                 <  3:138660/149‑1 (MQ=255)                        cAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                                                                                            <  2:253049/148‑1 (MQ=255)                        cAGGCGCTCGAGTTCCGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                                                                                            <  6:214343/148‑1 (MQ=255)                           gcgcTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                                                                                            <  6:12385/145‑1 (MQ=255)                           gcgcTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                                                                                            >  5:12385/1‑145 (MQ=255)                             gcTCGAGTTCGGCCAGCAGGTTTTCCTAGCCCTTGATCTCCTGCACGCTGAGATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                                                                                                  <  3:94699/121‑1 (MQ=255)                             gcTCGAGTTCGGCCAGCAGGTTTTCCAAGCCCTTGATCTCCTGCACGCTGAGATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                                                                                                  >  4:94699/1‑121 (MQ=255)                                 gAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGt                                                                                                                  <  6:303548/149‑1 (MQ=255)                                    ttCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCAc                                                                                                               <  3:226249/149‑1 (MQ=255)                                                gTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCg                                                                                                   >  1:61396/1‑149 (MQ=255)                                                     cccAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGGCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGt                                                                                               <  7:111251/148‑1 (MQ=255)                                                        aGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGtgat                                                                                            >  7:27440/1‑148 (MQ=255)                                                            cTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                                                                                              <  3:181198/126‑1 (MQ=255)                                                            cTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                                                                                              >  4:181198/1‑126 (MQ=255)                                                                    ccTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgtc                                                                                                                                >  6:40322/1‑100 (MQ=255)                                                                    ccTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgtc                                                                                                                                <  5:40322/100‑1 (MQ=255)                                                                     cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                                                                                              >  8:264430/1‑117 (MQ=255)                                                                     cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                                                                                              <  7:264430/117‑1 (MQ=255)                                                                     cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCt                                                                              >  2:289438/1‑149 (MQ=255)                                                                     cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCt                                                                              >  2:191828/1‑149 (MQ=255)                                                                         aCGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGgcg                                                                          >  8:34767/1‑149 (MQ=255)                                                                              ctgattgccgccctgctcggtgacgagcgcctgttcggcctggcggtactggacatcaccagcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCa                                                                     >  7:274022‑M2/70‑149 (MQ=255)                                                                               tgattgccgccctgctcggtgacgagcgcctgttcggcctggcggtactggacatcaccagcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGcacca                                                                                 <  6:90005‑M2/68‑1 (MQ=255)                                                                               tgattgccgccctgctcggtgacgagcgcctgttcggcctggcggtactggacatcaccagcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGcacca                                                                                 >  5:90005‑M2/69‑136 (MQ=255)                                                                                    GCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACAGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCAACCGGGc                                                               <  1:64903‑M1/149‑1 (MQ=255)                                                                                      CGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGt                                                                                               <  8:47418‑M1/115‑1 (MQ=255)                                                                                      CGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCGCGTCACTGACCGTACCCGGGGt                                                                                               >  7:47418‑M1/1‑115 (MQ=255)                                                                                           gTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCt                                                        >  8:275590/1‑149 (MQ=255)                                                                                                 tCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGc                                                  >  5:218706/1‑149 (MQ=255)                                                                                                 tCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGc                                                  >  7:291154/1‑149 (MQ=255)                                                                                                  ccAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGc                                                  <  1:289438/148‑1 (MQ=255)                                                                                                   cAGTACCGCCAGGCCGAACAGGCGCTCGTCCCCGAGCAGGGCGGCAATCACGTTGTCGCGGCGCTCGTCGAGCAGTGCATCGACACTGACCGAACACGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGccg                                                >  2:4208/1‑147 (MQ=255)                                                                                                   cAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCgg                                                <  6:218706/149‑1 (MQ=255)                                                                                                    acgagcgcctgttcggcctggcggtactggacatcaccagcggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCggg                                               <  8:274022‑M2/102‑1 (MQ=255)                                                                                                    aGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCggg                                               >  5:155914/1‑149 (MQ=255)                                                                                                    aGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCggg                                               <  2:61396/149‑1 (MQ=255)                                                                                                        ccGCCAGGCCGAACAGGCGCTCGTCACCGACCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCg                                           >  1:25871/1‑149 (MQ=255)                                                                                                           ccAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGcc                                         >  2:251404/1‑148 (MQ=255)                                                                                                            cAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGa                                       >  2:70626/1‑149 (MQ=255)                                                                                                                 cGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGc                                  <  1:191828/149‑1 (MQ=255)                                                                                                                                          ggcggcAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGa         >  6:184749/1‑149 (MQ=255)                                                                                                                                          ggcggcAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGa         <  8:291154/149‑1 (MQ=255)                                                                                                                                            cggcaatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGc       <  7:30731‑M2/142‑1 (MQ=255)                                                                                                                                               caatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCtt     <  3:36929‑M2/144‑1 (MQ=255)                                                                                                                                               caatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCtt     >  4:36929‑M2/5‑148 (MQ=255)                                                                                                                                                aatCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTtgc   >  4:63028‑M2/4‑148 (MQ=255)                                                                                                                                                 atCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTca                               >  6:126109‑M2/3‑120 (MQ=255)                                                                                                                                                 atCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAc  >  3:36642‑M2/3‑149 (MQ=255)                                                                                                                                                  tCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAc  >  4:299863‑M2/2‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCGCTCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGAC  >  NC_002947/1824721‑1825013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.