New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1824801 =	34 (0.690)	4 (0.090)	4/246	NT	11.0%	coding (453/2574 nt)	mutS	DNA mismatch repair protein MutS
	?	NC_002947	1824867 =	33 (0.720)					coding (387/2574 nt)	mutS	DNA mismatch repair protein MutS

GTCCCAGGGGGCGCGGCGGCGGGCGCCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCG  >  NC_002947/1824654‑1824941                                                                                                                                                    |                                                                                                                                             gtcaagctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctga                                                                                                                                              >  4:299863‑M1/148‑148 (MQ=255) gtcaagctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgAt                                                                                                                                             >  3:36642‑M1/148‑149 (MQ=255)  tCCCAGGGGGCGCGGCGGCGGGCGCCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAAtt                                                                                                                                            <  5:211487/149‑1 (MQ=255)  gcaagctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgAtt                                                                                                                                            >  4:63028‑M1/147‑149 (MQ=255)    aagctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTg                                                                                                                                           <  3:36929‑M1/4‑1 (MQ=255)    aagctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTg                                                                                                                                           >  4:36929‑M1/145‑148 (MQ=255)      gctcggcgagtcggtggtgatctgtgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCg                                                                                                                                        <  7:30731‑M1/7‑1 (MQ=255)          ggCGCGGCGGCGGGCGCCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTCATCTCCTGCACGCTGAAATTGCCGCTgg                                                                                                                                    >  8:111251/1‑149 (MQ=255)              cggcggcggGCGCCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGAt                                                                                                                                <  6:258964/149‑1 (MQ=255)                       gcgcCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTAc                                                                                                                       >  5:303548/1‑149 (MQ=255)                           cTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGa                                                                                                                                 <  6:52569/135‑1 (MQ=255)                           cTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGa                                                                                                                                 >  5:52569/1‑135 (MQ=255)                              tgagcagatcggcgaccccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgAt                                                                                                                                             >  6:126109‑M1/119‑120 (MQ=255)                                         gcaggcagGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACa                                                                                                         >  6:189923/1‑145 (MQ=255)                                         gcaggcagGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACa                                                                                                         <  5:189923/145‑1 (MQ=255)                                              cccgccaccagcaagggcccggtggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGt                                                                                                <  8:274022‑M1/47‑1 (MQ=255)                                                                    tggagcgccaggtggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                          >  7:274022‑M1/81‑149 (MQ=255)                                                                    gggATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                          >  4:138660/1‑149 (MQ=255)                                                                    gggATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGACGCTGGTGATGTCCAGTACAGCCAGGCCGAACATGCGCTCGTCACCGAGAAGGGCGGCAATCAg                                                                          >  3:185836/1‑149 (MQ=255)                                                                         cAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGt                                                                     >  8:30731/1‑149 (MQ=255)                                                                            cAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTcgc                                                                  >  4:226249/1‑149 (MQ=255)                                                                                tggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCa                                                                           <  6:90005‑M1/68‑1 (MQ=255)                                                                                tggtgcgcatcatcaccccgggtacggtcagtgacgaggcactgctcgacgagcgccgcgacaacctgATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCa                                                                           >  5:90005‑M1/69‑136 (MQ=255)                                                                                 cGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGaa                                                                                                           <  3:78987/103‑1 (MQ=255)                                                                                 cGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGaa                                                                                                           >  4:78987/1‑103 (MQ=255)                                                                                     cGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgt                                                         <  3:138660/149‑1 (MQ=255)                                                                                           cAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                    <  2:253049/148‑1 (MQ=255)                                                                                           cAGGCGCTCGAGTTCCGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                    <  6:214343/148‑1 (MQ=255)                                                                                              gcgcTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                    >  5:12385/1‑145 (MQ=255)                                                                                              gcgcTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGc                                                    <  6:12385/145‑1 (MQ=255)                                                                                                gcTCGAGTTCGGCCAGCAGGTTTTCCTAGCCCTTGATCTCCTGCACGCTGAGATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                          <  3:94699/121‑1 (MQ=255)                                                                                                gcTCGAGTTCGGCCAGCAGGTTTTCCAAGCCCTTGATCTCCTGCACGCTGAGATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAg                                                                          >  4:94699/1‑121 (MQ=255)                                                                                                    gAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGt                                          <  6:303548/149‑1 (MQ=255)                                                                                                       ttCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCAc                                       <  3:226249/149‑1 (MQ=255)                                                                                                                   gTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCg                           >  1:61396/1‑149 (MQ=255)                                                                                                                        cccAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGGCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGt                       <  7:111251/148‑1 (MQ=255)                                                                                                                           aGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGtgat                    >  7:27440/1‑148 (MQ=255)                                                                                                                               cTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                      >  4:181198/1‑126 (MQ=255)                                                                                                                               cTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                      <  3:181198/126‑1 (MQ=255)                                                                                                                                       ccTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgtc                                                        >  6:40322/1‑100 (MQ=255)                                                                                                                                       ccTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCtcgtc                                                        <  5:40322/100‑1 (MQ=255)                                                                                                                                        cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                      <  7:264430/117‑1 (MQ=255)                                                                                                                                        cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACt                                      >  8:264430/1‑117 (MQ=255)                                                                                                                                        cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCt      >  2:191828/1‑149 (MQ=255)                                                                                                                                        cTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCt      >  2:289438/1‑149 (MQ=255)                                                                                                                                            aCGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGgcg  >  8:34767/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                             GTCCCAGGGGGCGCGGCGGCGGGCGCCTGGGCGTTTCTCCGCAGGCAGGTCCCGTGGCCAGTCGTCGGGGATCAACAGCTCGACCGGGTTCAGGCGCTCGAGTTCGGCCAGCAGGTTTTCCCAGCCCTTGATCTCCTGCACGCTGAAATTGCCGCTGGTGATGTCCAGTACCGCCAGGCCGAACAGGCGCTCGTCACCGAGCAGGGCGGCAATCAGGTTGTCGCGGCGCTCGTCGAGCAGTGCCTCGTCACTGACCGTACCCGGGGTGATGATGCGCACCACCTGGCG  >  NC_002947/1824654‑1824941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.