New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2295836 = | 36 (0.740) | 5 (0.110) | 4/246 | NT | 11.9% | intergenic (+82/+51) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
? | NC_002947 | 4282152 = | 40 (0.870) | coding (1078/1089 nt) | PP_3753 | AraC family transcriptional regulator |
CGGGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2295992‑2295836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGGAAGG > NC_002947/4282152‑4282292 CGGGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGC‑ATCATGGTCCGCTGATTAAACATCGGGCTGCACAGGGGTCCGTGTGGGAGCGGGCATGC > 4:209241/1‑149 GAACCGCAGTGGTTCGCCGAGGCGGCGTTTCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACTTGGGTCCGTGTGGGAGCGGGCATGCCCGCG < 7:119310/148‑1 TCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGC > 5:188340/1‑149 GTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGGCGTGCACCGCGGTGc > 7:55532/1‑148 TGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGG < 2:145453/149‑1 ATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGG > 5:92456/1‑89 ATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGG < 6:92456/89‑1 CCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGGAAGG > 4:213993/1‑148 GCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGC > 5:259783/1‑80 GCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGC < 6:259783/80‑1 CGGGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2295992‑2295836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGGAAGG > NC_002947/4282152‑4282292 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |