New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295836 =	36 (0.740)	5 (0.110)	4/246	NT	11.9%	intergenic (+82/+51)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	4282152 =	40 (0.870)					coding (1078/1089 nt)	PP_3753	AraC family transcriptional regulator

CCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGG  >  NC_002947/2295690‑2295982                                                                                                                                                   |                                                                                                                                                   ccGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTc                                                                                                                                                  <  2:275917/149‑1 (MQ=255) ccGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGCCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTc                                                                                                                                                  >  5:373/1‑149 (MQ=255)     gCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTTTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCgg                                                                                                                                              <  6:61219/149‑1 (MQ=255)     gCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCgg                                                                                                                                              <  5:173459/149‑1 (MQ=255)      ccttccaccgggcgttcaagaagtggaccgggcagagcccagggagctaccgggcgcggctggtcggcctgcgttctacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTCGCgg                                                                                                                                              >  4:213993‑M1/142‑148 (MQ=255)         tACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCAt                                                                                                                                          <  6:118875/149‑1 (MQ=255)            cTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGcc                                                                                                                                       >  7:59925/1‑149 (MQ=255)             tGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGccc                                                                                                                                      >  2:223605/1‑149 (MQ=255)              gcgcCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGcccc                                                                                                                                     >  5:88906/1‑148 (MQ=255)                 ccAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTc                                                                                                                                  <  1:223605/149‑1 (MQ=255)                         ccAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACgg                                                                                                                          <  3:224581/149‑1 (MQ=255)                         ccAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACg                                                                                                                           >  4:224581/1‑148 (MQ=255)                              ttCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCa                                                                                                                     >  1:209870/1‑149 (MQ=255)                                  aTGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCAtgtg                                                                                                                 >  2:242887/1‑149 (MQ=255)                                          cTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCCTGCCCCCTCCCACACGGACCCATGTGCAGCCCGa                                                                                                         >  7:188032/1‑149 (MQ=255)                                             cggggCAAGCACCACCATTGTTGTGGCTTGTGGTTGGTCCTTGGGGTAGCGGGCATCCCCGCTAACACGGGCAGTGCCGGTGCCATCCACCGCGGGGCCCGCTTCGCGGGCATGCCGGCTCCCACACGGACCCATGTGCAGCCCGAt                                                                                                        <  8:188032/144‑1 (MQ=25)                                             aGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGt                                                                                                      <  3:246682/149‑1 (MQ=255)                                                       accaccacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCg                                                                                            <  2:209870/149‑1 (MQ=255)                                                            cacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGAcc                                                                                        >  4:172270/1‑148 (MQ=255)                                                                gATGTGGGTTGTGTGAGGTCCTTGGGGGAGCGGGCAGGCCGGCGAACACGGGCAGAGCCGGTGCCATCCCCCGCGGTGCCCGCTTGGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGa                                                                                    <  8:59925/148‑1 (MQ=255)                                                                 aTCTGGCTTGTGTGAGGGCCTTGTGGGCGCGGGCAGGCCCGCGAACACGGGCAGAGCCGGTGCCATCCCCCGCGGTGCCCGCTTCGGGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGAt                                                                                   <  3:28744/148‑1 (MQ=38)                                                                      gCTTGTGTTTTGTCCTTGTGGGCGGGGGCATGCCCGCTAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGGGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCtt                                                                             <  6:88906/149‑1 (MQ=37)                                                                      gCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCCCGGGCATGCCCGCTCCCACACGGACCCCTGTGCAGCCCGATGTTTAATCAGGGGACCCTGGTTGCCtt                                                                             >  8:39006/1‑149 (MQ=37)                                                                       cTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTg                                                                            <  1:242887/149‑1 (MQ=255)                                                                       cTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccag                                                           >  5:62691/1‑149 (MQ=21)                                                                        gcctgcgttctacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTcgc                                                                                                                                                >  5:259783‑M1/76‑80 (MQ=255)                                                                        gcctgcgttctacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTcgc                                                                                                                                                <  6:259783‑M1/5‑1 (MQ=255)                                                                          gtgtgAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccagcc                                                         <  6:62691/148‑1 (MQ=21)                                                                                    cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCCGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAag                                                               >  3:248971/1‑149 (MQ=255)                                                                                     ttGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagc                                                              >  3:246361/1‑149 (MQ=255)                                                                                           gAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCGTAGCCGGCCAGCCCCCGCCCACACCGGCCCATGTGCCGCCCGAAGGTTAATAAGCGGACCAAGAATGCCCTGAACAGCTACGAAgcccgcca                                                        >  4:59508/1‑149 (MQ=21)                                                                                               caaggtGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCAccc                                                     <  8:92946/143‑1 (MQ=255)                                                                                                 gCATGCCGGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGGGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTc                                                  <  6:373/149‑1 (MQ=255)                                                                                                       ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAt                                                                                                        >  5:92456‑M1/45‑89 (MQ=255)                                                                                                       ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAt                                                                                                        <  6:92456‑M1/45‑1 (MQ=255)                                                                                                       ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagcca                                            <  2:145453‑M1/105‑1 (MQ=255)                                                                                                           tggcacCGGCTCTGCCGGTGTCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGGCGCCCGATGTTTAATCAGCGGACCATGAATGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTc                                        >  7:10705/4‑149 (MQ=38)                                                                                                           gAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTc                                        <  4:246361/149‑1 (MQ=255)                                                                                                             acacCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCg                                      <  3:172270/149‑1 (MQ=255)                                                                                                               acCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                          >  7:180588/1‑111 (MQ=255)                                                                                                               acCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                          <  8:180588/111‑1 (MQ=255)                                                                                                                 cGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCGCCCACCCGGACCCATGTGCAGCCCGATGGTTAATCAGCGGACCATG‑CTGCCGTGCACAGCGCCGAAGCCAGCCCCCCCGCCAGCCAGCTCCGCacac                                 >  3:209241/1‑149 (MQ=37)                                                                                                                  ggCAGAGCCGGTGCCATCCACCGCGGTGCCCGCATACCGGGCAAGCCCCCAACCACACGGACCCAAATGCAGCCCGAAGTTTAATAAGCGGACCAAGATTGACATGAACACCACCCAAGCCCACCACCCCAACAACCACCTCCGCacac                                 >  2:113886/1‑149 (MQ=255)                                                                                                                  gcaccgcggtgcacgccaccggctctgccggtgTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCacac                                 >  7:55532‑M1/34‑149 (MQ=255)                                                                                                                             tGCCATCCACCGCGGTGCCCGCTGCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAgcc                      <  3:243400/149‑1 (MQ=255)                                                                                                                                       gctctgccggtgTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGa            >  5:188340‑M1/13‑149 (MQ=255)                                                                                                                                                 gCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCgg  >  2:259349/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGG  >  NC_002947/2295690‑2295982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.