New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2377876	52 (1.060)	3 (0.070)	3/246	NT	5.5%	coding (517/999 nt)	cmaX	protein CmaX
	?	NC_002947	= 2377901	54 (1.180)					coding (542/999 nt)	cmaX	protein CmaX

CGCTGCGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2377721‑2377876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgtcgGATTCGACCTTTTCTTCCTCCAGATCGACGAGCTCGGCCAGGTCGCTGACCAGGCCCTGGACCTTTTCGGTCAGCAACTCGCCCATCAACAGCAACAGTTCCGAGGCCGATTTCGGCCCCCTGCCCTGTTCCAGCAGCTG  <  NC_002947/2377901‑2377762                                                                                                                                                                                                                                                                                                          CGCTGCGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAG                                                                                                                                                     >  6:50464/1‑149  GCTGCGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGC                                                                                                                                                    >  6:272445/1‑149      CGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGT                                                                                                                                                >  1:115548/1‑149      CGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGT                                                                                                                                                <  5:183019/149‑1       GCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTC                                                                                                                                               >  6:98979/1‑149                    GCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCG                                                                                                                                                 >  1:70410/1‑134                    GCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCG                                                                                                                                                 <  2:70410/134‑1                                          CAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTCGGATTCGACCTTTTCTTCCTCCAGATCGACGA                                                                                                               <  2:115548/146‑1                                                            AGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTCGGATTCGACCTTTTCTTCCTCCAGATCGACGAGCT                                                                                                            >  7:109773/1‑131                                                            AGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTCGGATTCGACCTTTTCTTCCTCCAGATCGACGAGCT                                                                                                            <  8:109773/131‑1                                                                                                                                                      CTCGTCGGATTCGACCTTTTCTTCCTCCAGATCGACGAGCTCGGCCAGGTCGCTGACCAGGCCCTGGACCTTTTCGGTCAGCAACTCGCCCATCAACAGCAACAGTTCCGAGGCCGATTTCGGCCCCCTGCCCTGTTCCAGCAGCTG  >  4:273104/1‑147                                                                                                                                                         GTCGGATTCGACCTTTTCTTCCTCCAGATCGACGAGCTCGGCCAGGTCGCTGACCAGGCCCTGGACCTTTTCGGTCAGCAACTCGCCCATCAACAGCAACAGTTCCGAGGCCGATTTCGGCCCCCTGCCCTGTTCCAGCAGC    <  5:251278/142‑1                                                                                                                                                         GTCGGATTCGACCTTTTCTTCCTCCAGATCGACGAGCTCGGCCAGGTCGCTGACCAGGCCCTGGACCTTTTCGGTCAGCAACTCGCCCATCAACAGCAACAGTTCCGAGGCCGATTTCGGCCCCCTGCCCTGTTCCAGCAGC    >  6:251278/1‑142                                                                                                                                                                                                                                                                                                          CGCTGCGCCTGCGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTCAGCGACCTGGCCGAGCTCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2377721‑2377876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgtcgGATTCGACCTTTTCTTCCTCCAGATCGACGAGCTCGGCCAGGTCGCTGACCAGGCCCTGGACCTTTTCGGTCAGCAACTCGCCCATCAACAGCAACAGTTCCGAGGCCGATTTCGGCCCCCTGCCCTGTTCCAGCAGCTG  <  NC_002947/2377901‑2377762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.