New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2377876	52 (1.060)	3 (0.070)	3/246	NT	5.5%	coding (517/999 nt)	cmaX	protein CmaX
	?	NC_002947	= 2377901	54 (1.180)					coding (542/999 nt)	cmaX	protein CmaX

CGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGA  >  NC_002947/2377732‑2378023                                                                                                                                                   |                                                                                                                                                    cGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGAt                                                                                                                                                   <  8:48099/147‑1 (MQ=255) cGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGAt                                                                                                                                                   <  5:110133/147‑1 (MQ=255)    ccGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTg                                                                                                                                                >  1:284088/1‑147 (MQ=255)     cGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTggag                                                                                                                                             <  1:57085/149‑1 (MQ=255)     cGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTggag                                                                                                                                             <  2:284088/149‑1 (MQ=255)           gcgcCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGgaaga                                                                                                                                        >  4:226096/1‑148 (MQ=255)                aGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGt                                                                                                                                  <  8:118621/149‑1 (MQ=255)                 gCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTc                                                                                                                                 <  6:148904/149‑1 (MQ=255)                     tGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAAt                                                                                                                             <  5:50464/149‑1 (MQ=255)                      gAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATc                                                                                                                            >  2:95977/1‑149 (MQ=255)                             tcCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTggag                                                                                                                                             >  5:55433/1‑125 (MQ=255)                             tcCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTggag                                                                                                                                             <  6:55433/125‑1 (MQ=255)                               cAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGgattcgaccttttcttcctccagatcgacga                                                                                                                      <  2:115548‑M1/146‑32 (MQ=255)                               cAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCcgacgag                                                                                                                     >  4:273104‑M2/1‑140 (MQ=255)                                 gctgctGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCcgac                                                                                                                        <  5:251278‑M2/142‑5 (MQ=255)                                 gctgctGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCcgac                                                                                                                        >  6:251278‑M2/1‑138 (MQ=255)                                     ctgGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTAt                                                                                                               <  5:272445/147‑1 (MQ=255)                                       ggAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGgaagaa                                                                                                                                       >  2:124065/1‑121 (MQ=255)                                       ggAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGccc                                                                                                           >  8:95639/1‑149 (MQ=255)                                        gAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGcccc                                                                                                          >  1:224861/1‑149 (MQ=255)                                        gAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGcccc                                                                                                          >  8:276178/1‑149 (MQ=255)                                         aaCAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAACGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCg                                                                                                         <  6:292772/149‑1 (MQ=255)                                         aaCAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCg                                                                                                         >  3:163380/1‑149 (MQ=255)                                            agggcagggGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAg                                                                                                      <  2:224861/149‑1 (MQ=255)                                              ggcagggGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCg                                                                                                                   >  3:175864/1‑134 (MQ=255)                                              ggcagggGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCg                                                                                                                   <  4:175864/134‑1 (MQ=255)                                                 agggGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGgattcgaccttttcttcctccagatcgacgagct                                                                                                                   >  7:109773‑M1/1‑97 (MQ=255)                                                 agggGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGgattcgaccttttcttcctccagatcgacgagct                                                                                                                   <  8:109773‑M1/131‑35 (MQ=255)                                                      gCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGcc                                                                                            >  8:170378/1‑149 (MQ=255)                                                        cGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTg                                                                                          >  6:91571/1‑149 (MQ=255)                                                         gAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTgc                                                                                         <  5:91571/149‑1 (MQ=255)                                                         gAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAG‑AAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTgca                                                                                        <  5:98979/149‑1 (MQ=255)                                                               ggCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGcagcag                                                                                    <  3:226096/148‑1 (MQ=255)                                                                 ccTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGGTTTCCGCGACCTGGCCGTGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCTACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGa                                                                                   <  1:95977/149‑1 (MQ=255)                                                                    cGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGt                                                                                                                                  >  4:268121/1‑97 (MQ=255)                                                                            ttgctgttgATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGc                                                                      >  4:297702/1‑149 (MQ=255)                                                                             tgctgttgATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAg                                                                                                   >  3:204394/1‑119 (MQ=255)                                                                             tgctgttgATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAg                                                                                                   <  4:204394/119‑1 (MQ=255)                                                                                tgttgATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGTGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTgcag                                                                                       >  5:210028/1‑128 (MQ=255)                                                                                tgttgATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGTGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTgcag                                                                                       <  6:210028/128‑1 (MQ=255)                                                                                    gATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCt                                                              >  8:48345/1‑149 (MQ=255)                                                                                       gggCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTgc                                                           >  1:46812/1‑149 (MQ=255)                                                                                         gCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTgcgc                                                         >  5:246634/1‑149 (MQ=255)                                                                                                gCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTtc                                                  >  4:43908/1‑149 (MQ=255)                                                                                                      cGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGccc                                            >  5:98278/1‑149 (MQ=255)                                                                                                       gAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGcccc                                           <  4:163380/149‑1 (MQ=255)                                                                                                        aaaaGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCg                                          >  2:20847/1‑149 (MQ=255)                                                                                                                     ccTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCt                             <  7:276178/149‑1 (MQ=255)                                                                                                                        gg‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcg                          >  4:149677/1‑149 (MQ=255)                                                                                                                        gg‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcg                          >  2:43640/1‑149 (MQ=255)                                                                                                                         g‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcgc                         <  7:95639/149‑1 (MQ=255)                                                                                                                         g‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAc                           <  2:46812/147‑1 (MQ=255)                                                                                                                              aGCGACCTGGCCGAGCTAGTCGATCTGGAGGAAGAAAAGGTCGAAAACGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcgcg                        >  3:165296/1‑147 (MQ=255)                                                                                                                                      ggCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcg                          <  8:18137/137‑1 (MQ=255)                                                                                                                                      ggCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTAcg                          >  7:18137/1‑137 (MQ=255)                                                                                                                                      ggCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTcgc              >  4:49462/1‑149 (MQ=255)                                                                                                                                       gCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGATATCTACGCGCAGTTGTcg               <  7:170378/147‑1 (MQ=255)                                                                                                                                         cGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTcgcg             >  4:190937/1‑147 (MQ=255)                                                                                                                                         cGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCgca           <  3:43908/149‑1 (MQ=255)                                                                                                                                           aGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccct                           >  7:109773‑M2/1‑34 (MQ=255)                                                                                                                                           aGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccct                           <  8:109773‑M2/131‑98 (MQ=255)                                                                                                                                           aGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCgcagc         <  7:48345/149‑1 (MQ=255)                                                                                                                                             cTCGTCGgattcgaccttttcttcctccagatcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccctgccctgttccagcagctg         >  4:273104‑M1/1‑7 (MQ=255)                                                                                                                                              tcgtcgATCTGGAGGAAGAAAAGGTCGAATCcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccctgccctgttccagcagctg         <  2:115548‑M2/146‑116 (MQ=255)                                                                                                                                              tcgtcgATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCaaa      <  2:201217/149‑1 (MQ=255)                                                                                                                                                gtcggattcgaccttttcttcctccagatcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccctgccctgttccagcagc           >  6:251278‑M1/1‑4 (MQ=255)                                                                                                                                                gtcggattcgaccttttcttcctccagatcgacgagctcggccaggtcgctgaccaggccctggaccttttcggtcagcaactcgcccatcaacagcaacagttccgaggccgatttcggccccctgccctgttccagcagc           <  5:251278‑M1/142‑139 (MQ=255)                                                                                                                                                gtcgATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACgg                                    <  7:179140/117‑1 (MQ=255)                                                                                                                                                gtcgATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACgg                                    >  8:179140/1‑117 (MQ=255)                                                                                                                                                   gATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATg    >  4:218386/1‑146 (MQ=255)                                                                                                                                                   gATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGa  <  3:218386/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGGCCGTTGCGCGCCAGCGATGAAATTCTCCAGCTGCTGGAACAGGGCAGGGGGCCGAAATCGGCCTCGGAACTGTTGCTGTTGATGGGCGAGTTGCTGACCGAAAAGGTCCAGGGCCTGG‑‑TCAGCGACCTGGCCGAGCTCGTCGATCTGGAGGAAGAAAAGGTCGAATCCGACGAGCGGTATGCCCCGGAGCAGGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGA  >  NC_002947/2377732‑2378023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.