New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2378934 =	44 (0.900)	4 (0.090)	4/252	NT	9.1%	coding (214/825 nt)	cmpX	protein CmpX
	?	NC_002947	2378967 =	38 (0.810)					coding (247/825 nt)	cmpX	protein CmpX

GGGCAAGTACAGGGCGAGCATGTCGAGGGTTGCCGAAACCCGCTCAAGGCCCAGCGATTCGGCAGCCGAGACCAGGAAGATGAGCAGCACGAACCAATAGACGATCTTGCCGATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379083‑2378934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTGG  >  NC_002947/2378967‑2379114                                                                                                                                                                                                                                                                                                            GGGCAAGTACAGGGCGAGCATGTCGAGGGTTGCCGAAACCCGCTCAAGGCCCAGCGATTCGGCAGCCGAGACCAGGAAGATGAGCAGCACGAACCAATAGACGATCTTGCCGATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGAC                                                                                                                                                       >  7:44114/1‑149                                                                                                                GATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTA                                        >  1:108330/1‑149                                                                                                                 ATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTG                                                                                                         >  7:264479/1‑83                                                                                                                 ATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTG                                                                                                         <  8:264479/83‑1                                                                                                                      GGTCGAGATCGGCACCTGGATGCCGCCGCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGCCAACCCTCGACATCCTCGCCCTGTACTTGCC                                  >  4:246474/1‑149                                                                                                                                                   GACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCT       <  2:64854/147‑1                                                                                                                                                   GACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGT          <  3:80791/144‑1                                                                                                                                                      CCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTGG  >  1:49026/1‑149                                                                                                                                                                                                                                                                                                            GGGCAAGTACAGGGCGAGCATGTCGAGGGTTGCCGAAACCCGCTCAAGGCCCAGCGATTCGGCAGCCGAGACCAGGAAGATGAGCAGCACGAACCAATAGACGATCTTGCCGATCAGGGTCGAGATCGGCACCTGGATGCCGCCGCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379083‑2378934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTGG  >  NC_002947/2378967‑2379114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.