New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2378934 =	44 (0.900)	4 (0.090)	4/252	NT	9.1%	coding (214/825 nt)	cmpX	protein CmpX
	?	NC_002947	2378967 =	38 (0.810)					coding (247/825 nt)	cmpX	protein CmpX

GAACTTCATCCCCAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTT  >  NC_002947/2378786‑2379079                                                                                                                                                     |                                                                                                                                                  ccagcagcaccagagccgcgccgaacaccttgggcaagtacagggcgagcatgtcgagggttgccgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagg                                                                                                                                                   >  1:49026‑M1/149‑149 (MQ=255)      agcaccagagccgcgccgaacaccttgggcaagtacagggcgagcatgtcgagggttgccgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTc                                                                                                                                                <  2:64854‑M1/4‑1 (MQ=255)       cATCCCCAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTcgcg                                                                                                                                             >  5:229833/1‑149 (MQ=255)         tCCCCAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCgcggc                                                                                                                                           <  1:238000/149‑1 (MQ=255)         accagagccgcgccgaacaccttgggcaagtacagggcgagcatgtcgagggttgccgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTc                                                                                                                                                <  3:80791‑M1/4‑1 (MQ=255)           cccAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGcggcgg                                                                                                                                         >  4:107980/1‑149 (MQ=255)           cccAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGcggcgg                                                                                                                                         >  7:184810/1‑149 (MQ=255)             cAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTAGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCa                                                                                                                                       >  7:165228/1‑149 (MQ=255)                 cTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATc                                                                                                                                     >  7:128692/1‑147 (MQ=255)                       ggCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGc                                                                                                                              <  8:179097/148‑1 (MQ=255)                            gcTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCTACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGAtct                                                                                                                        <  7:159329/149‑1 (MQ=255)                                gTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGAc                                                                                                                    <  6:229833/149‑1 (MQ=255)                                 ggcaagtacagggcgaggatgtcgagggttggcgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGAcc                                                                                                                   >  4:246474‑M1/117‑149 (MQ=255)                                  cGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGAccc                                                                                                                  >  5:266753/1‑149 (MQ=255)                                   gtggtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGAccc                                                                                                                  <  4:121115/148‑1 (MQ=255)                                   gtggtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCt                                                                                                                 >  2:239912/1‑149 (MQ=255)                                      gtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGa                                                                                                                     >  5:47997/1‑142 (MQ=255)                                      gtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGa                                                                                                                     <  6:47997/142‑1 (MQ=255)                                       tacagggcgagcatgtcgagggttgccgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATc                                                                                                             >  1:108330‑M1/111‑149 (MQ=255)                                        gctgctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCg                                                                                                            <  3:6800/149‑1 (MQ=255)                                           gctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGc                                                                                                          >  3:151973/1‑148 (MQ=255)                                            ctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGc                                                                                                          >  7:52747/1‑147 (MQ=255)                                                   tCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGt                                                                                                  <  3:107980/148‑1 (MQ=255)                                                     gtggtgGACAAGCTGCTCGACACGATGCTGTCCAAACTGTTGTCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTa                                                                                               <  8:128692/149‑1 (MQ=255)                                                      tggtggCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTAt                                                                                              <  8:184810/149‑1 (MQ=255)                                                      tggtggCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTAt                                                                                              >  4:186700/1‑149 (MQ=255)                                                                    ctCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGtgctg                                                                                  <  8:52747/147‑1 (MQ=255)                                                                         cacGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCt                                                                           >  8:44114/1‑149 (MQ=255)                                                                                 tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTc                                                                         >  8:18779/1‑143 (MQ=255)                                                                                 tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTc                                                                         <  7:18779/143‑1 (MQ=255)                                                                                 tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGtc                                                                   >  8:8405/1‑149 (MQ=255)                                                                                      aaaCTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGc                                                              <  7:8405/149‑1 (MQ=255)                                                                                            ttGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGcc                                                          <  1:239912/147‑1 (MQ=255)                                                                                                ccAAATTTGGCCTGGACCGCCTGATGGCCGGCCCCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGCCCCTGATCGGCAACATCGTCTAGTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAGTCg                                                    >  2:27757/1‑149 (MQ=255)                                                                                                   aaTTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTg                                                 <  4:151973/149‑1 (MQ=255)                                                                                                        caggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGAt                                                                                                              >  7:264479‑M1/46‑83 (MQ=255)                                                                                                        caggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGAt                                                                                                              <  8:264479‑M1/38‑1 (MQ=255)                                                                                                         gCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCtt                                           <  3:186700/149‑1 (MQ=255)                                                                                                           cTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCtt                                           >  6:210552/1‑147 (MQ=255)                                                                                                             ggACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGc                                       >  8:161715/1‑149 (MQ=255)                                                                                                                   ccTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCg                                                                >  2:81095/1‑118 (MQ=255)                                                                                                                   ccTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCg                                                                <  1:81095/118‑1 (MQ=255)                                                                                                                           ccGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCg                                      <  1:300076/136‑1 (MQ=255)                                                                                                                           ccGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTCATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGACGAAACGCTGGGCCTTCAGCg                                      >  2:300076/1‑136 (MQ=255)                                                                                                                            cGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAAccc                        >  4:80791/1‑149 (MQ=255)                                                                                                                            cGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAAccc                        >  3:121498/1‑149 (MQ=255)                                                                                                                               cACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCg                     <  4:121498/149‑1 (MQ=255)                                                                                                                                      cTCACCAAAATGCTTGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCt              >  6:305084/1‑149 (MQ=255)                                                                                                                                         aCCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTc             <  7:161715/147‑1 (MQ=255)                                                                                                                                         aCCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGc           >  2:57772/1‑149 (MQ=255)                                                                                                                                            aaaaTGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCt        <  5:210552/149‑1 (MQ=255)                                                                                                                                                  cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCTTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACtt  <  1:57772/149‑1 (MQ=255)                                                                                                                                                  cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCAGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTa     <  2:63660/146‑1 (MQ=255)                                                                                                                                                  cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCAGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTa     >  1:63660/1‑146 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GAACTTCATCCCCAACCTGTTCGGCGCGCTGGTCGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTT  >  NC_002947/2378786‑2379079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.