New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2378934 =	44 (0.900)	4 (0.090)	4/252	NT	9.1%	coding (214/825 nt)	cmpX	protein CmpX
	?	NC_002947	2378967 =	38 (0.810)					coding (247/825 nt)	cmpX	protein CmpX

CGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTGG  >  NC_002947/2378819‑2379114                                                                                                                                                     |                                                                                                                                                    cGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGAccc                                                                                                                                                     >  5:266753/1‑149 (MQ=255)  gtggtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGAccc                                                                                                                                                     <  4:121115/148‑1 (MQ=255)  gtggtgCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCt                                                                                                                                                    >  2:239912/1‑149 (MQ=255)      tacagggcgagcatgtcgagggttgccgaaacccgctcaaggcccagcgattcggcagccgagaccaggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATc                                                                                                                                                >  1:108330‑M1/111‑149 (MQ=255)       gctgctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCg                                                                                                                                               <  3:6800/149‑1 (MQ=255)          gctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGc                                                                                                                                             >  3:151973/1‑148 (MQ=255)           ctCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGc                                                                                                                                             >  7:52747/1‑147 (MQ=255)                  tCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGt                                                                                                                                     <  3:107980/148‑1 (MQ=255)                    gtggtgGACAAGCTGCTCGACACGATGCTGTCCAAACTGTTGTCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTa                                                                                                                                  <  8:128692/149‑1 (MQ=255)                     tggtggCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTAt                                                                                                                                 >  4:186700/1‑149 (MQ=255)                     tggtggCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTAt                                                                                                                                 <  8:184810/149‑1 (MQ=255)                                   ctCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGtgctg                                                                                                                     <  8:52747/147‑1 (MQ=255)                                        cacGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCt                                                                                                              >  8:44114/1‑149 (MQ=255)                                                tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTc                                                                                                            >  8:18779/1‑143 (MQ=255)                                                tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTc                                                                                                            <  7:18779/143‑1 (MQ=255)                                                tgTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGtc                                                                                                      >  8:8405/1‑149 (MQ=255)                                                     aaaCTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGc                                                                                                 <  7:8405/149‑1 (MQ=255)                                                           ttGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGcc                                                                                             <  1:239912/147‑1 (MQ=255)                                                               ccAAATTTGGCCTGGACCGCCTGATGGCCGGCCCCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGCCCCTGATCGGCAACATCGTCTAGTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAGTCg                                                                                       >  2:27757/1‑149 (MQ=255)                                                                  aaTTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTg                                                                                    <  4:151973/149‑1 (MQ=255)                                                                       caggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGAt                                                                                                                                                 >  7:264479‑M1/46‑83 (MQ=255)                                                                       caggaagatgagcagcacgaaccaatagacgatcttgccgatcagGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGAt                                                                                                                                                 <  8:264479‑M1/38‑1 (MQ=255)                                                                        gCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCtt                                                                              <  3:186700/149‑1 (MQ=255)                                                                          cTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCtt                                                                              >  6:210552/1‑147 (MQ=255)                                                                            ggACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGc                                                                          >  8:161715/1‑149 (MQ=255)                                                                                  ccTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCg                                                                                                   >  2:81095/1‑118 (MQ=255)                                                                                  ccTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCg                                                                                                   <  1:81095/118‑1 (MQ=255)                                                                                          ccGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCg                                                                         <  1:300076/136‑1 (MQ=255)                                                                                          ccGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTCATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGACGAAACGCTGGGCCTTCAGCg                                                                         >  2:300076/1‑136 (MQ=255)                                                                                           cGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAAccc                                                           >  3:121498/1‑149 (MQ=255)                                                                                           cGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAAccc                                                           >  4:80791/1‑149 (MQ=255)                                                                                              cACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCg                                                        <  4:121498/149‑1 (MQ=255)                                                                                                     cTCACCAAAATGCTTGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCt                                                 >  6:305084/1‑149 (MQ=255)                                                                                                        aCCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTc                                                <  7:161715/147‑1 (MQ=255)                                                                                                        aCCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGc                                              >  2:57772/1‑149 (MQ=255)                                                                                                           aaaaTGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCt                                           <  5:210552/149‑1 (MQ=255)                                                                                                              gatcagggtcgagatcggcacctggatgccgccgcgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTa                                        >  1:108330‑M2/40‑149 (MQ=255)                                                                                                               atcagggtcgagatcggcacctggatgccgccgcgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTg                                                                                                         <  8:264479‑M2/45‑1 (MQ=255)                                                                                                               atcagggtcgagatcggcacctggatgccgccgcgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTg                                                                                                         >  7:264479‑M2/39‑83 (MQ=255)                                                                                                                 cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCTTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACtt                                     <  1:57772/149‑1 (MQ=255)                                                                                                                 cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCAGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTa                                        <  2:63660/146‑1 (MQ=255)                                                                                                                 cTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCAGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTa                                        >  1:63660/1‑146 (MQ=255)                                                                                                                    ggtcgagatcggcacctggatgccgccgcgaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGCCAACCCTCGACATCCTCGCCCTGTACTTGcc                                  >  4:246474‑M2/34‑149 (MQ=255)                                                                                                                     GTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGccc                                 >  7:44114‑M1/1‑149 (MQ=255)                                                                                                                           gcggcATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGgtg                           >  1:123123/1‑149 (MQ=255)                                                                                                                              gcATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCGGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTc                        <  4:218461/149‑1 (MQ=255)                                                                                                                                     ggTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGGCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCCCCCTGTACTTGCCCAAGGTGTTCGGCGCgg                 <  1:27757/149‑1 (MQ=255)                                                                                                                                          cGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTc                        >  2:264737/1‑137 (MQ=255)                                                                                                                                          cGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTc                        <  1:264737/137‑1 (MQ=255)                                                                                                                                           gATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTgg           >  7:95685/1‑149 (MQ=255)                                                                                                                                             tctcGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGtg         >  3:35931/1‑149 (MQ=255)                                                                                                                                              ctcGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGtgc        >  1:64854/1‑149 (MQ=255)                                                                                                                                                 gaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGtgct       <  2:64854‑M2/143‑1 (MQ=255)                                                                                                                                                 gaccCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGt          <  3:80791‑M2/140‑1 (MQ=255)                                                                                                                                                  aCCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCATGGTCTCGGCTCCCGAATCGATGGCACTTGAGCGGGTTTAGGCAACCATCGACATGCTCCACCTGTACTTGCGCAAGGTGTTCGGCCCGGCACAGCTgcttct    >  8:266208/1‑149 (MQ=255)                                                                                                                                                    cCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTgg  >  1:49026‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGTGGTGCTGCTCGGTTTCGTGGTGGCCAAGCTGCTCGACACGCTGCTGTCCAAACTGTTGGCCAAATTTGGCCTGGACCGCCTGATGGCCGGCACCGGCCTCACCAAAATGCTCGGTCGCGGCGGCATCCAGGTGCCGATCTCGACCCTGATCGGCAAGATCGTCTATTGGTTCGTGCTGCTCATCTTCCTGGTCTCGGCTGCCGAATCGCTGGGCCTTGAGCGGGTTTCGGCAACCCTCGACATGCTCGCCCTGTACTTGCCCAAGGTGTTCGGCGCGGCTCTGGTGCTGCTGG  >  NC_002947/2378819‑2379114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.