New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2778759 =	29 (0.590)	3 (0.060)	3/256	NT	8.5%	coding (599/924 nt)	PP_2431	LysR family transcriptional regulator
	?	NC_002947	2778819 =	36 (0.750)					coding (539/924 nt)	PP_2431	LysR family transcriptional regulator

CCAACTACATCGCCCTGCCACTGGCCGAATGGAACCGCCGCGTGCTGGTGGCCTCGCCCGACTACCTGGCCCGCCACGGCCGCCCGCTTACCCCCGACGCGCTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2778906‑2778759 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCA  >  NC_002947/2778819‑2778966                                                                                                                                                                                                                                                                                                          CCAACTACATCGCCCTGCCACTGGCCGAATGGAACCGCCGCGTGCTGGTGGCCTCGCCCGACTACCTGGCCCGCCACGGCCGCCCGCTTACCCCCGACGCGCTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTA                                                                                                                                                      <  4:75881/148‑1                                                                                   CCCGCTTACCCCCGACGCGCTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATG                                                                     >  7:132997/1‑147                                                                                    CCGCTTACCCCCGACGCGCTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGCAG                                                                  >  7:205679/1‑149                                                                                                      CTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGCAGTTGGCATCCTGGTTGAGG                                                <  8:205679/149‑1                                                                                                                                                  GTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGC    >  7:229756/1‑149                                                                                                                                                   TAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCC   <  6:16022/149‑1                                                                                                                                                    AAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCA  >  5:37130/1‑149                                                                                                                                                                                                                                                                                                          CCAACTACATCGCCCTGCCACTGGCCGAATGGAACCGCCGCGTGCTGGTGGCCTCGCCCGACTACCTGGCCCGCCACGGCCGCCCGCTTACCCCCGACGCGCTGCAGCAGCATGCCTGTCTGCTGTACATGCAGCACAGCCGGGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2778906‑2778759 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGGGCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCA  >  NC_002947/2778819‑2778966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.