New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2778759 =	29 (0.590)	3 (0.060)	3/256	NT	8.5%	coding (599/924 nt)	PP_2431	LysR family transcriptional regulator
	?	NC_002947	2778819 =	36 (0.750)					coding (539/924 nt)	PP_2431	LysR family transcriptional regulator

GCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCAT  >  NC_002947/2778675‑2778967                                                                                                                                                  |                                                                                                                                                       ctgcatcgccctgccactggccgaatggaaccgccgcgtgctggtggcctcgcccgactacctggcccgccacggccgcccgctTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAgcgg                                                                                                                                                    >  7:205679‑M1/85‑149 (MQ=255)  ccAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAgcggg                                                                                                                                                   >  3:150431/1‑149 (MQ=255)    catcgccctgccactggccgaatggaaccgccgcgtgctggtggcctcgcccgactacctggcccgccacggccgcccgctTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAgcggg                                                                                                                                                   >  7:132997‑M1/82‑147 (MQ=255)     ggcggcGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAgcgggcgg                                                                                                                                                <  1:172571/149‑1 (MQ=255)                   tCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAg                                                                                                                                  >  6:112202/1‑149 (MQ=255)                                     aGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGccac                                                                                                                >  5:16022/1‑149 (MQ=255)                                                cACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACgcggc                                                                                                     >  8:115299/1‑149 (MQ=255)                                                 aCCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACgcggcg                                                                                                    >  5:12370/1‑149 (MQ=255)                                                      cACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTc                                                                                                <  3:152563/148‑1 (MQ=255)                                                       aCGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAg                                                                                                                     <  2:26672/126‑1 (MQ=255)                                                       aCGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAg                                                                                                                     >  1:26672/1‑126 (MQ=255)                                                          gTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTc                                                                                           >  2:108678/1‑149 (MQ=255)                                                          gTGCGGTTACCCAACTGCCACTTGTCCTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTc                                                                                           <  8:268130/149‑1 (MQ=255)                                                           tGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTACATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCg                                                                                          <  2:33958/149‑1 (MQ=255)                                                                ttACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAg                                                                                     <  7:115299/149‑1 (MQ=255)                                                                    ccAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTgg                                                                                  >  2:228726/1‑148 (MQ=255)                                                                             aCTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCAAGCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCCCGCGGCGGTTCCATACGGCCAGTGGCAGG‑‑GCGAt                                                                       >  1:242794/1‑149 (MQ=255)                                                                             aCTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATg                                                                      >  2:225053/1‑149 (MQ=255)                                                                             aCTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATg                                                                      >  1:226592/1‑149 (MQ=255)                                                                                cccgcttacccccgacgcgctgcagcagcatgcctgtctgctgtacatgcagcacagccgggtgtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATg                                                                      >  7:132997‑M2/67‑147 (MQ=255)                                                                                 ccgcttacccccgacgcgctgcagcagcatgcctgtctgctgtacatgcagcacagccgggtgtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGCAg                                                                   >  7:205679‑M2/66‑149 (MQ=255)                                                                                    gTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTCCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTgg                                                               >  2:91517/1‑149 (MQ=255)                                                                                     TACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTgg                                                               <  4:75881‑M1/148‑1 (MQ=255)                                                                                           cGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTg                                                        <  2:242794/149‑1 (MQ=255)                                                                                              cTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAgg‑‑g                                                                           >  4:102475/1‑127 (MQ=255)                                                                                              cTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAgg‑‑g                                                                           <  3:102475/127‑1 (MQ=255)                                                                                                   ctgcagcagcatgcctgtctgctgtacatgcagcacagccgggtgtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGCAGTTGGCATCCTGGTTGAgg                                                 <  8:205679‑M2/102‑1 (MQ=255)                                                                                                          tACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGc                                          <  2:149693/148‑1 (MQ=255)                                                                                                          tACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGc                                          <  5:46007/148‑1 (MQ=255)                                                                                                           aCAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCg                                         >  4:89746/1‑148 (MQ=255)                                                                                                             agcagACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGAt                                      >  1:141002/1‑149 (MQ=255)                                                                                                               cagACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATgg                                    <  1:108678/149‑1 (MQ=255)                                                                                                                 gACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGcc                                  <  2:141002/149‑1 (MQ=255)                                                                                                                   cAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCcac                                <  5:112202/149‑1 (MQ=255)                                                                                                                      gCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATc                             >  5:172668/1‑149 (MQ=255)                                                                                                                       cATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATcc                            <  4:150431/149‑1 (MQ=255)                                                                                                                        aTGCTGCAGCAGAGC‑GTCGGGGGTAAGCGGGCGGCCCACGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTAGGCCAGTGGCAGG‑‑GCGATGTAGTTGCCATCCTCGTTGAGGCAATAGCGGATGTCCACATcac                           >  2:268047/1‑147 (MQ=37)                                                                                                                              ctgcAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAggg                      <  6:12370/148‑1 (MQ=255)                                                                                                                              ctgcAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATACACAggg                      >  8:238003/1‑148 (MQ=255)                                                                                                                                        gTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGa            <  2:226592/149‑1 (MQ=255)                                                                                                                                        gTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGa            <  1:225053/149‑1 (MQ=255)                                                                                                                                         tCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAg           <  8:147369/149‑1 (MQ=255)                                                                                                                                           gggggTAAGCGGGCGGCAGTGGGGGGCCATGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTTGCAGGCCTCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAg           <  1:91517/149‑1 (MQ=38)                                                                                                                                              ggTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCgg      <  3:161017/149‑1 (MQ=255)                                                                                                                                               gtaAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGc     >  7:229756‑M2/4‑149 (MQ=255)                                                                                                                                                taAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGcc    <  6:16022‑M2/147‑1 (MQ=255)                                                                                                                                                 aAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCa   >  5:37130‑M2/2‑149 (MQ=255)                                                                                                                                                  aGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCAt  <  1:228726/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                       GCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGC‑GTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCATTCGGCCAGTGGCAGG‑‑GCGATGTAGTTGGCATCCTGGTTGAGGCCATAGCGGATGGCCACATCCACAGGGTCGCGGTTGAGGTCGGCCAT  >  NC_002947/2778675‑2778967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.