| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2849762 = | 47 (0.960) | 3 (0.060) | 3/248 | NT | 6.5% | coding (334/927 nt) | PP_2502 | LysR family transcriptional regulator |
| ? | NC_002947 | 2849836 = | 42 (0.910) | coding (260/927 nt) | PP_2502 | LysR family transcriptional regulator | |||||
TCCGTCTGACCGAGGGCGGGCGAGGCTACTACGAACAGTGTCGTCAGGCGCTGACCCAGCTGGTGGAGGCCGAACGGGTGGTGACCGGGCAGCAGCAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2849911‑2849762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGA > NC_002947/2849836‑2849980 TCCGTCTGACCGAGGGCGGGCGAGGCTACTACGAACAGTGTCGTCAGGCGCTGACCCAGCTGGTGGAGGCCGAACGGGTGGTGACCGGGCAGCAGCAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCAC < 5:193447/149‑1 GGTGGTGACCGGGCAGCAGCAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACG > 6:44308/1‑148 TGGTGACCGGGCAGCAGCAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGAT > 5:173373/1‑149 CAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGA < 6:173373/149‑1 CACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGA > 1:64976/1‑149 TCCGTCTGACCGAGGGCGGGCGAGGCTACTACGAACAGTGTCGTCAGGCGCTGACCCAGCTGGTGGAGGCCGAACGGGTGGTGACCGGGCAGCAGCAGGAGCCTTCGGGCACACTGCGCATCAGCCTGCCCACGACCTACGGGCACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2849911‑2849762‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGA > NC_002947/2849836‑2849980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |