New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2849762 =	47 (0.960)	3 (0.060)	3/248	NT	6.5%	coding (334/927 nt)	PP_2502	LysR family transcriptional regulator
	?	NC_002947	2849836 =	42 (0.910)					coding (260/927 nt)	PP_2502	LysR family transcriptional regulator

ATCAGGGTCGAATCCGGCTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGA  >  NC_002947/2849617‑2849907                                                                                                                                                  |                                                                                                                                                  tcagtcgctcgatcagccgcctggaagagcgcttgggctccagactgttcgtccgtaccacccgcagcatccgtctgaccgagggcgggcgaggctactacgaacagtgtcgtcaggcgctgacccagctggtggaggccgaacgggtg                                                                                                                                                >  1:64976‑M1/146‑149 (MQ=255)     gggTCGAATCCGGCTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGc                                                                                                                                            <  5:296574/149‑1 (MQ=255)        tCGAATCCGGCTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCg                                                                                                                                         >  3:110823/1‑149 (MQ=255)          gAATCCGGCTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTa                                                                                                                                       <  5:61608/149‑1 (MQ=255)                  cTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTgg                                                                                                                               <  4:110823/149‑1 (MQ=255)                     tgCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTggg                                                                                                                              <  1:114115/147‑1 (MQ=255)                          gcacgcGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCt                                                                                                                        <  8:69292/148‑1 (MQ=255)                          gcacgcGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCt                                                                                                                        >  7:69292/1‑148 (MQ=255)                            acgcGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGAt                                                                                                                     >  2:147899/1‑149 (MQ=255)                                      ccAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATgcg                                                                                                                  <  5:202132/142‑1 (MQ=255)                                      ccAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATgcg                                                                                                                  >  6:202132/1‑142 (MQ=255)                                      ccAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGtgtg                                                                                                           >  8:290542/1‑149 (MQ=255)                                      ccAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGtgtg                                                                                                           >  7:195809/1‑149 (MQ=255)                                          gTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGc                                                                                                                             >  6:62411/1‑127 (MQ=255)                                          gTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGc                                                                                                                             <  5:62411/127‑1 (MQ=255)                                             gTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAg                                                                                                                                      <  3:288464/115‑1 (MQ=255)                                             gTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAg                                                                                                                                      >  4:288464/1‑115 (MQ=255)                                             gTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGaa                                                                                                     <  2:213311/148‑1 (MQ=255)                                                    tccgtaccacccgcagcatccgtctgaccgagggcgggcgaggctactacgaacagtgtcgtcaggcgctgacccagctggtggaggccgaacgGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCctg                                                                                             <  6:173373‑M1/55‑1 (MQ=255)                                                         gACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGCCCTGCACCTACGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTCGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCctgctgct                                                                                        >  1:66554/1‑149 (MQ=255)                                                                     atccgtctgaccgagggcgggcgaggctactacgaacagtgtcgtcaggcgctgacccagctggtggaggccgaacgGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTcacca                                                                            >  5:173373‑M1/78‑149 (MQ=255)                                                                        cgtctgaccgagggcgggcgaggctactacgaacagtgtcgtcaggcgctgacccagctggtggaggccgaacgGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCaccacc                                                                          >  6:44308‑M1/75‑148 (MQ=255)                                                                          ggTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAgt                                                                                                              >  7:228382/1‑110 (MQ=255)                                                                          ggTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAgt                                                                                                              <  8:228382/110‑1 (MQ=255)                                                                               cccAGGTGGATGTCGACCTGCACCTTCGTGGAGCGCCGTAGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCAGTATGTCGTGTGCAGGCTGATGCTCAGTGTGCCCGAATGCTACTGCTGATGCCCGGTCACCACCCGTTCGGc                                                                  <  4:280174/149‑1 (MQ=255)                                                                               cccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGc                                                                  <  8:195809/149‑1 (MQ=255)                                                                               cccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGc                                                                  <  7:290542/149‑1 (MQ=255)                                                                                ccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGcc                                                                 >  7:83063/1‑149 (MQ=255)                                                                                ccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGcc                                                                 >  4:78582/1‑149 (MQ=255)                                                                                  aGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTc                                                               >  7:145794/1‑149 (MQ=255)                                                                                       gATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTTGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTccac                                                            >  6:294975/1‑147 (MQ=255)                                                                                         tGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGc                                                        >  8:157311/1‑149 (MQ=255)                                                                                            cGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                     <  8:145794/149‑1 (MQ=255)                                                                                             gACCTGCACCTTCGGGTAGCGCCGTCGAAACTTGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                     <  5:294975/148‑1 (MQ=255)                                                                                             gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                     <  5:271963/148‑1 (MQ=255)                                                                                             gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                     <  2:283056/148‑1 (MQ=255)                                                                                             gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                     <  1:147899/148‑1 (MQ=255)                                                                                                cTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTc                                                                                                <  1:117094/102‑1 (MQ=255)                                                                                                cTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTc                                                                                                >  2:117094/1‑102 (MQ=255)                                                                                                    aCCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAgcgc                                             <  8:83063/149‑1 (MQ=255)                                                                                                      cTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCt                                           >  5:72880/1‑149 (MQ=255)                                                                                                           ggTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCctgct                                                                                           <  6:8587/96‑1 (MQ=255)                                                                                                           ggTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCctgct                                                                                           >  5:8587/1‑96 (MQ=255)                                                                                                           ggTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTgacga                                      <  5:212389/149‑1 (MQ=255)                                                                                                           ggTAGCGCCGTCGAAACTCGCGCAGCAGCGGCAGGATTCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTTCCCGCTCACCACCCCTTCGGCCTCCACCAGCTGGGTCAGCTCCTtact                                       >  4:231711/1‑147 (MQ=255)                                                                                                                      cGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCg                             >  5:175351/1‑147 (MQ=255)                                                                                                                          aCTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGtagtag                       >  8:133020/1‑149 (MQ=255)                                                                                                                                  agcagcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgccc               <  7:133020/149‑1 (MQ=255)                                                                                                                                   gcagcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCGCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGACTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgcccg              >  4:167269/1‑149 (MQ=255)                                                                                                                                     agcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgcccgcc            >  4:269167/1‑149 (MQ=255)                                                                                                                                       cGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCt          <  6:72880/149‑1 (MQ=255)                                                                                                                                               tGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGa  <  3:78582/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ATCAGGGTCGAATCCGGCTGTGCACGCACGCGGATGGCCAGGTCGTAGCCCTCGCCGACAAAGTCGATGTTGCGGTTGCCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGA  >  NC_002947/2849617‑2849907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.