New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2849762 =	47 (0.960)	3 (0.060)	3/248	NT	6.5%	coding (334/927 nt)	PP_2502	LysR family transcriptional regulator
	?	NC_002947	2849836 =	42 (0.910)					coding (260/927 nt)	PP_2502	LysR family transcriptional regulator

CCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGA  >  NC_002947/2849695‑2849980                                                                                                                                              |                                                                                                                                                 cccAGGTGGATGTCGACCTGCACCTTCGTGGAGCGCCGTAGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCAGTATGTCGTGTGCAGGCTGATGCTCAGTGTGCCCGAATGCTACTGCTGATGCCCGGTCACCACCCGTTCGGc                                                                                                                                           <  4:280174/149‑1 (MQ=255) cccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGc                                                                                                                                           <  8:195809/149‑1 (MQ=255) cccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGc                                                                                                                                           <  7:290542/149‑1 (MQ=255)  ccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGcc                                                                                                                                          >  7:83063/1‑149 (MQ=255)  ccAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGcc                                                                                                                                          >  4:78582/1‑149 (MQ=255)    aGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTc                                                                                                                                        >  7:145794/1‑149 (MQ=255)         gATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTTGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTccac                                                                                                                                     >  6:294975/1‑147 (MQ=255)           tGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGc                                                                                                                                 >  8:157311/1‑149 (MQ=255)              cGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                                                                                              <  8:145794/149‑1 (MQ=255)               gACCTGCACCTTCGGGTAGCGCCGTCGAAACTTGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                                                                                              <  5:294975/148‑1 (MQ=255)               gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                                                                                              <  1:147899/148‑1 (MQ=255)               gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                                                                                              <  5:271963/148‑1 (MQ=255)               gACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTgg                                                                                                                              <  2:283056/148‑1 (MQ=255)                      aCCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAgcgc                                                                                                                      <  8:83063/149‑1 (MQ=255)                        cTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCt                                                                                                                    >  5:72880/1‑149 (MQ=255)                             ggTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTgacga                                                                                                               <  5:212389/149‑1 (MQ=255)                             ggTAGCGCCGTCGAAACTCGCGCAGCAGCGGCAGGATTCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTTCCCGCTCACCACCCCTTCGGCCTCCACCAGCTGGGTCAGCTCCTtact                                                                                                                >  4:231711/1‑147 (MQ=255)                                        cGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCg                                                                                                      >  5:175351/1‑147 (MQ=255)                                            aCTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGtagtag                                                                                                >  8:133020/1‑149 (MQ=255)                                                    agcagcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgccc                                                                                        <  7:133020/149‑1 (MQ=255)                                                     gcagcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCGCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGACTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgcccg                                                                                       >  4:167269/1‑149 (MQ=255)                                                       agcGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTcgcccgcc                                                                                     >  4:269167/1‑149 (MQ=255)                                                         cGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCt                                                                                   <  6:72880/149‑1 (MQ=255)                                                                 tGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGa                                                                           <  3:78582/149‑1 (MQ=255)                                                                    ggtggtgaccgggcagcagcaggagccttcgggcacactgcgcatcagcctgcccacgacctacgggcaccaccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACg                                                                         >  6:44308‑M2/75‑148 (MQ=255)                                                                     GTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGa                                                                       <  5:193447‑M1/149‑1 (MQ=255)                                                                      tggtgaccgggcagcagcaggagccttcgggcacactgcgcatcagcctgcccacgacctacgggcaccaccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGAt                                                                      >  5:173373‑M2/73‑149 (MQ=255)                                                                           cccGTAGGTCGTGGGCAGGCTGATGCGCAGTGTTCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCAGTCAGACGGAtgctgc                                                                 >  1:196612/1‑149 (MQ=255)                                                                              gTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCggg                                                              >  4:260324/1‑149 (MQ=255)                                                                              gTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCggg                                                              >  7:143889/1‑149 (MQ=255)                                                                                 ggTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCAGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGggtgg                                                           >  4:158565/1‑149 (MQ=255)                                                                                     gTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTAc                                                        <  7:157311/148‑1 (MQ=255)                                                                                       caggagccttcgggcacactgcgcatcagcctgcccacgacctacgggcaccaccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGa                                                     <  6:173373‑M2/94‑1 (MQ=255)                                                                                                gATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTc                                            >  1:284839/1‑149 (MQ=255)                                                                                                 aTGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTc                                            <  3:260324/148‑1 (MQ=255)                                                                                                 aTGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCt                                           <  6:175351/149‑1 (MQ=255)                                                                                                    cgcAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTgg                                         <  3:269167/148‑1 (MQ=255)                                                                                                    cgcAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTg                                          >  6:175683/1‑147 (MQ=255)                                                                                                    cgcAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGa                                        <  3:231711/149‑1 (MQ=255)                                                                                                             cccttaGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGGCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGaa                                                 <  3:76662/126‑1 (MQ=255)                                                                                                               cGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTTAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGct                             >  1:138224/1‑149 (MQ=255)                                                                                                                   ggCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTc                         <  3:167269/149‑1 (MQ=255)                                                                                                                      tCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAg                      >  6:30674/1‑149 (MQ=255)                                                                                                                        ctgctgctgCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGa                                        <  7:80066/129‑1 (MQ=255)                                                                                                                        ctgctgctgCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGa                                        >  8:80066/1‑129 (MQ=255)                                                                                                                           ctgctgcCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAggcgg                  <  5:30674/148‑1 (MQ=255)                                                                                                                                     gTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGa                                        >  6:133547/1‑116 (MQ=255)                                                                                                                                          caccCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGa  >  1:64976‑M2/5‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                 CCCAGGTGGATGTCGACCTGCACCTTCGGGTAGCGCCGTCGAAACTCGGGCAGCAGCGGCAGGATGCGGTGGTGCCCGTAGGTCGTGGGCAGGCTGATGCGCAGTGTGCCCGAAGGCTCCTGCTGCTGCCCGGTCACCACCCGTTCGGCCTCCACCAGCTGGGTCAGCGCCTGACGACACTGTTCGTAGTAGCCTCGCCCGCCCTCGGTCAGACGGATGCTGCGGGTGGTACGGACGAACAGTCTGGAGCCCAAGCGCTCTTCCAGGCGGCTGATCGAGCGACTGA  >  NC_002947/2849695‑2849980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.