New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2866692 =	37 (0.760)	5 (0.110)	3/248	NT	12.0%	coding (85/1263 nt)	glllA	gallate dioxygenase
	?	NC_002947	2866730 =	38 (0.820)					coding (47/1263 nt)	glllA	gallate dioxygenase

AACGGCCACGCCCGGCTGCGCGCGACCCCCGCAGTAACCGCGCCGTAACCTGTAACAGAGGACTTTCGCATGGCTCGTATCATTGGTGGCCTGGCCGTCTCCCACACCCCAACCATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2866845‑2866692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  NC_002947/2866730‑2866877                                                                                                                                                                                                                                                                                                                AACGGCCACGCCCGGCTGCGCGCGACCCCCGCAGTAACCGCGCCGTAACCTGTAACAGAGGACTTTCGCATGGCTCGTATCATTGGTGGCCTGGCCGTCTCCCACACCCCAACCATCGGCTTCGCAGTCGACCACGACAAACAGGAAG                                                                                                                                                            >  4:303193/1‑148                                                                                                                  CATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGG                                             <  1:289020/146‑1                                                                                                                  CATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGG                                             <  1:293586/146‑1                                                                                                                  CATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGG                                             >  2:289020/1‑146                                                                                                                  CATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGG                                             >  2:293586/1‑146                                                                                                                    TCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTG                                        >  4:187016/1‑149                                                                                                                                                          GATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  <  1:48086/149‑1                                                                                                                                                          GATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  3:118761/1‑149                                                                                                                                                          GATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  3:123407/1‑149                                                                                                                                                                                                                                                                                                                AACGGCCACGCCCGGCTGCGCGCGACCCCCGCAGTAACCGCGCCGTAACCTGTAACAGAGGACTTTCGCATGGCTCGTATCATTGGTGGCCTGGCCGTCTCCCACACCCCAACCATCGGCTTCGCAGTCGACCACGACAAACAGGAAGAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2866845‑2866692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  NC_002947/2866730‑2866877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.