New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2866692 =	37 (0.760)	5 (0.110)	3/248	NT	12.0%	coding (85/1263 nt)	glllA	gallate dioxygenase
	?	NC_002947	2866730 =	38 (0.820)					coding (47/1263 nt)	glllA	gallate dioxygenase

AAAGAAGAACGAGGTGATGTGGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  NC_002947/2866582‑2866877                                                                                                                                                     |                                                                                                                                                    cacgcccggctgcgcgcgacccccgcagtaaccgcgccgtaacctgtaacagaggactttcgcatggctcgtatcattggtggcctggccgtctcccacaccccaaccatCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGa                                                                                                                                                     >  4:187016‑M1/111‑149 (MQ=255)      ccggctgcgcgcgacccccgcagtaaccgcgccgtaacctgtaacagaggactttcgcatggctcgtatcattggtggcctggccgtctcccacaccccaaccatCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATg                                                                                                                                                   <  1:289020‑M1/41‑1 (MQ=255)      ccggctgcgcgcgacccccgcagtaaccgcgccgtaacctgtaacagaggactttcgcatggctcgtatcattggtggcctggccgtctcccacaccccaaccatCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATg                                                                                                                                                   <  1:293586‑M1/41‑1 (MQ=255)      ccggctgcgcgcgacccccgcagtaaccgcgccgtaacctgtaacagaggactttcgcatggctcgtatcattggtggcctggccgtctcccacaccccaaccatCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATg                                                                                                                                                   >  2:293586‑M1/106‑146 (MQ=255)      ccggctgcgcgcgacccccgcagtaaccgcgccgtaacctgtaacagaggactttcgcatggctcgtatcattggtggcctggccgtctcccacaccccaaccatCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATg                                                                                                                                                   >  2:289020‑M1/106‑146 (MQ=255)              gTGATGTGGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGtgtg                                                                                                                                        <  2:128314/149‑1 (MQ=255)                gATGTGGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTgg                                                                                                                                       >  5:14535/1‑148 (MQ=255)                 aTGTGGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTgg                                                                                                                                       >  2:9455/1‑147 (MQ=255)                    tgGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGgaga                                                                                                                                   <  2:170199/148‑1 (MQ=255)                      gTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGTGACgg                                                                                                                                >  8:75197/1‑149 (MQ=255)                      gTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACgg                                                                                                                                >  8:201735/1‑149 (MQ=255)                       tCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACggc                                                                                                                               >  5:87741/1‑149 (MQ=255)                          ttGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACggccag                                                                                                                            >  7:48783/1‑149 (MQ=255)                                    agaagaGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACggc                                                                                                                               >  1:85493/1‑136 (MQ=255)                                    agaagaGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACggc                                                                                                                               <  2:85493/136‑1 (MQ=255)                                     gaagaGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATg                                                                                                                  <  4:133914/148‑1 (MQ=255)                                      aagaGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGccac                                                                                                                       >  5:137772/1‑142 (MQ=255)                                      aagaGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGccac                                                                                                                       <  6:137772/142‑1 (MQ=255)                                          gTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATAc                                                                                                              >  3:303193/1‑147 (MQ=255)                                           tACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAg                                                                                                           >  8:153464/1‑149 (MQ=255)                                             cGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGc                                                                                                          <  6:87741/148‑1 (MQ=255)                                              gTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGACGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGAGTGCGAAGCCGATGGGTGGGGTGTGGGAGACGGCCAGGCCACCAATGAAACGAGCCa                                                                                                        >  5:191437/1‑149 (MQ=255)                                                             ctgcAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTg                                                                                         >  5:271931/1‑149 (MQ=255)                                                                  gCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACa                                                                                    <  8:80629/149‑1 (MQ=255)                                                                  gCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACa                                                                                    <  7:153464/149‑1 (MQ=255)                                                                   ccACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAg                                                                                   >  1:10133/1‑149 (MQ=255)                                                                   ccACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAg                                                                                   <  2:10133/149‑1 (MQ=255)                                                                     aCGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATATGAGCCATGCGAAAGTCctct                                                                                          >  6:94023/1‑140 (MQ=255)                                                                     aCGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGGCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATATGAGCCATGCGAAAGTCctct                                                                                          <  5:94023/140‑1 (MQ=255)                                                                       gTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTa                                                                               <  7:201735/149‑1 (MQ=255)                                                                                              gAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGa                                                                                                                 <  8:89848/92‑1 (MQ=255)                                                                                              gAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGa                                                                                                                 >  7:89848/1‑92 (MQ=255)                                                                                                      gcgcCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAg                                                                                   <  8:173694/114‑1 (MQ=255)                                                                                                           cAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGc                                           >  6:263561/1‑149 (MQ=255)                                                                                                            catcggcttcgcagtcgaccacgacaaacaggaagaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCgg                                             >  2:293586‑M2/42‑146 (MQ=255)                                                                                                            catcggcttcgcagtcgaccacgacaaacaggaagaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCgg                                             >  2:289020‑M2/42‑146 (MQ=255)                                                                                                            catcggcttcgcagtcgaccacgacaaacaggaagaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCgg                                             <  1:293586‑M2/105‑1 (MQ=255)                                                                                                            catcggcttcgcagtcgaccacgacaaacaggaagaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCgg                                             <  1:289020‑M2/105‑1 (MQ=255)                                                                                                              tcggcttcgcagtcgaccacgacaaacaggaagaagccgATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTg                                        >  4:187016‑M2/40‑149 (MQ=255)                                                                                                                     CTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGtt                                  >  4:303193‑M1/1‑148 (MQ=255)                                                                                                                      ttcCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTTGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTgg                                >  6:128279/1‑149 (MQ=255)                                                                                                                        ccTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGc                               <  6:14535/148‑1 (MQ=255)                                                                                                                           gTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGAGAAAGTCCTCTGTTACAGTTTACGGCGCGTGTACTGCGGGGGTCTCGCGCAGCCGGGAGTGGCCGTTGGCCAg                            >  4:108195/1‑148 (MQ=255)                                                                                                                            tttGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGa                          <  1:9455/149‑1 (MQ=255)                                                                                                                                tCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGAAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGt                                         >  2:101357/1‑130 (MQ=255)                                                                                                                                tCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGAAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGt                                         <  1:101357/130‑1 (MQ=255)                                                                                                                                  gTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGc                      >  6:94888/1‑147 (MQ=255)                                                                                                                                  gTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGc                      >  8:29848/1‑147 (MQ=255)                                                                                                                                   tGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAg                   <  6:271931/149‑1 (MQ=255)                                                                                                                                            gCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGAt                         <  2:78701/134‑1 (MQ=255)                                                                                                                                            gCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGAt                         >  1:78701/1‑134 (MQ=255)                                                                                                                                                    gATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCg  >  3:123407‑M2/2‑149 (MQ=255)                                                                                                                                                    gATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCg  >  3:118761‑M2/2‑149 (MQ=255)                                                                                                                                                    gATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCg  <  1:48086‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAAGAAGAACGAGGTGATGTGGTCGTTGAAGATATAGAAGAGTACGTCCGGCTGGCGCTGCTGCAGCCACGTGCGGATCGGCTCGAAGCTTTCGAAGATCGGCGCCCAGGCGGCTTCTTCCTGTTTGTCGTGGTCGACTGCGAAGCCGATGGTTGGGGTGTGGGAGACGGCCAGGCCACCAATGATACGAGCCATGCGAAAGTCCTCTGTTACAGGTTACGGCGCGGTTACTGCGGGGGTCGCGCGCAGCCGGGCGTGGCCGTTGGCCAGGATCGCCAGGGCAGCGGCGAATGCCG  >  NC_002947/2866582‑2866877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.