New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2883870 = | 39 (0.800) | 3 (0.060) | 3/248 | NT | 7.7% | coding (430/927 nt) | PP_2539 | LysR family transcriptional regulator |
? | NC_002947 | 2883924 = | 35 (0.760) | coding (484/927 nt) | PP_2539 | LysR family transcriptional regulator |
TTACGGCCCAGCCCTGGCCGGCAGATGGCCAGGTCCAGGCGCCCTTCGTCCAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2883928‑2883870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAG > NC_002947/2883924‑2884027 TTACGGCCCAGCCCTGGCCGGCAGATGGCCAGGTCCAGGCGCCCTTCGTCCAGCTGGGCCGTAACGCCGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCG > 6:106356/1‑149 GGCCCAGCCCTGGCCGGCAGATGGCCAGGTCCAGGCGCCCTTCGTCCAGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCAC > 6:253836/1‑149 GCCGGCAGATGGCCAGGTCCAGGCGCCCTTCGTCCAGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAG < 5:253836/147‑1 TTACGGCCCAGCCCTGGCCGGCAGATGGCCAGGTCCAGGCGCCCTTCGTCCAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2883928‑2883870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAG > NC_002947/2883924‑2884027 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |