New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2883870 =	39 (0.800)	3 (0.060)	3/248	NT	7.7%	coding (430/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	2883924 =	35 (0.760)					coding (484/927 nt)	PP_2539	LysR family transcriptional regulator

CATCGTCCAAGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCA  >  NC_002947/2883725‑2884016                                                                                                                                                  |                                                                                                                                                   cATCGTCCAAGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGccc                                                                                                                                                 <  7:118010/149‑1 (MQ=255)   tCGTCCAAGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCGTCGGGCGCTTGCGCCGCAAACAGCAGCAGCTGGCAGTGGAAATCGCCGAGAATAACAGCGCGAACCTGCTCGCCCAg                                                                                                                                               >  3:174654/1‑149 (MQ=255)      tCCAAGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTg                                                                                                                                            >  6:57259/1‑149 (MQ=255)         aaGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCACGCCCAGCTGGAc                                                                                                                                         >  3:60385/1‑149 (MQ=255)                 ggcgggcgGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGgcg                                                                                                                                 >  5:86787/1‑149 (MQ=255)                              cGGTGGGCAGTATCATGGGGGCTATGCCTACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGc                                                                                                                     >  5:118433/1‑148 (MQ=255)                                gTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCAt                                                                                                                  >  5:298041/1‑149 (MQ=255)                                   ggCAGTATCATGGGGGCTATGCCTACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTg                                                                                                               <  6:118433/149‑1 (MQ=255)                                      aGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCg                                                                                                            >  5:269197/1‑149 (MQ=255)                                      aGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCg                                                                                                            <  6:86787/149‑1 (MQ=255)                                          ctgatcttgagtgccgccgccccggccagcggatgctgcggatgcgcgaccaccgccaacggctcctgggtcagttcgacaaagccatattccgccgcgttacgGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGc                                                                                                          <  5:253836‑M1/43‑1 (MQ=255)                                             tGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCACGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAggg                                                                                                     <  4:60385/149‑1 (MQ=255)                                                  gCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTggg                                                                                                <  6:269197/149‑1 (MQ=255)                                                   cTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGc                                                                                               <  2:49398/149‑1 (MQ=255)                                                    gtgccgccgccccggccagcggatgctgcggatgcgcgaccaccgccaacggctcctgggtcagttcgacaaagccatattccgccgcgttacgGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGcc                                                                                              >  6:253836‑M1/95‑149 (MQ=255)                                                        cgccgccccggccagcggatgctgcggatgcgcgaccaccgccaacggctcctgggtcagttcgacaaagccatattccgcggcgttacgGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTaa                                                                                          >  6:106356‑M1/91‑149 (MQ=255)                                                        cccACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTaa                                                                                          <  6:298041/149‑1 (MQ=255)                                                         ccACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAAc                                                                                         >  1:109244/1‑149 (MQ=255)                                                                      cgcCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATg                                                                            <  2:109244/149‑1 (MQ=255)                                                                         ccTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCt                                                                         >  1:296593/1‑149 (MQ=255)                                                                         ccTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCt                                                                         >  4:248074/1‑149 (MQ=255)                                                                             gggCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGt                                                                     >  6:111529/1‑149 (MQ=255)                                                                                 gcTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGaa                                                                 >  4:133390/1‑149 (MQ=255)                                                                                   ttGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACt                                                               >  7:188443/1‑149 (MQ=255)                                                                                      cgccgcAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGAc                                                            <  8:188443/149‑1 (MQ=255)                                                                                             aaCAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAg                                                     >  5:171343/1‑149 (MQ=255)                                                                                              aCAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGc                                                    >  1:206337/1‑149 (MQ=255)                                                                                                aGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCg                                                  >  8:284520/1‑149 (MQ=255)                                                                                                  ccGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCa                                                         <  4:173725/140‑1 (MQ=255)                                                                                                  ccGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCa                                                         >  3:173725/1‑140 (MQ=255)                                                                                                    gCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                              <  3:248074/149‑1 (MQ=255)                                                                                                           gCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCggtggt                                       >  4:76216/1‑149 (MQ=255)                                                                                                           gCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCggtgg                                        <  2:296593/148‑1 (MQ=255)                                                                                                             aGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcg                                     >  3:251176/1‑149 (MQ=255)                                                                                                              gtgtAAATCGCCGAGAATAACCCCCCCCACCTGCTCGCCCAGCTGCACGAAGGGCGCCTGGACCTGTCCATCTGCCTGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcgc                                    <  4:174654/149‑1 (MQ=255)                                                                                                                 gAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcgctga                                 >  2:142223/1‑146 (MQ=255)                                                                                                                 gAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATAGGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCa                                 >  7:269487/1‑149 (MQ=255)                                                                                                                  aaaTCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                              <  4:256168/135‑1 (MQ=255)                                                                                                                  aaaTCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                              >  3:256168/1‑135 (MQ=255)                                                                                                                                 ccAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTg                 >  2:38637/1‑149 (MQ=255)                                                                                                                                  cAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTgg                >  1:143911/1‑149 (MQ=255)                                                                                                                                           ccTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcgg       <  1:38637/149‑1 (MQ=255)                                                                                                                                            cTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcggc      >  2:21557/1‑149 (MQ=255)                                                                                                                                               cTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATACGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcggcg     <  8:269487/147‑1 (MQ=255)                                                                                                                                                tCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGCGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCa  >  1:235606/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CATCGTCCAAGGCCAGGGCGGGCGGCTGGCGGTGGGCAGTATCATGGGGGCTATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCA  >  NC_002947/2883725‑2884016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.