New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2883870 =	39 (0.800)	3 (0.060)	3/248	NT	7.7%	coding (430/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	2883924 =	35 (0.760)					coding (484/927 nt)	PP_2539	LysR family transcriptional regulator

TATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGGGTGGTTTATCCGGCC  >  NC_002947/2883776‑2884064                                                                                                                                                     |                                                                                                                                             gtgccgccgccccggccagcggatgctgcggatgcgcgaccaccgccaacggctcctgggtcagttcgacaaagccatattccgccgcgttacgGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGcc                                                                                                                                              >  6:253836‑M1/95‑149 (MQ=255)     cgccgccccggccagcggatgctgcggatgcgcgaccaccgccaacggctcctgggtcagttcgacaaagccatattccgcggcgttacgGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTaa                                                                                                                                          >  6:106356‑M1/91‑149 (MQ=255)     cccACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTaa                                                                                                                                          <  6:298041/149‑1 (MQ=255)      ccACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAAc                                                                                                                                         >  1:109244/1‑149 (MQ=255)                   cgcCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATg                                                                                                                            <  2:109244/149‑1 (MQ=255)                      ccTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCt                                                                                                                         >  1:296593/1‑149 (MQ=255)                      ccTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCt                                                                                                                         >  4:248074/1‑149 (MQ=255)                          gggCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGt                                                                                                                     >  6:111529/1‑149 (MQ=255)                              gcTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGaa                                                                                                                 >  4:133390/1‑149 (MQ=255)                                ttGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACt                                                                                                               >  7:188443/1‑149 (MQ=255)                                   cgccgcAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGAc                                                                                                            <  8:188443/149‑1 (MQ=255)                                          aaCAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAg                                                                                                     >  5:171343/1‑149 (MQ=255)                                           aCAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGc                                                                                                    >  1:206337/1‑149 (MQ=255)                                             aGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCg                                                                                                  >  8:284520/1‑149 (MQ=255)                                               ccGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCa                                                                                                         >  3:173725/1‑140 (MQ=255)                                               ccGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCa                                                                                                         <  4:173725/140‑1 (MQ=255)                                                 gCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                                                                              <  3:248074/149‑1 (MQ=255)                                                        gCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCggtggt                                                                                       >  4:76216/1‑149 (MQ=255)                                                        gCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCggtgg                                                                                        <  2:296593/148‑1 (MQ=255)                                                          aGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcg                                                                                     >  3:251176/1‑149 (MQ=255)                                                           gtgtAAATCGCCGAGAATAACCCCCCCCACCTGCTCGCCCAGCTGCACGAAGGGCGCCTGGACCTGTCCATCTGCCTGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcgc                                                                                    <  4:174654/149‑1 (MQ=255)                                                              gAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTcgctga                                                                                 >  2:142223/1‑146 (MQ=255)                                                              gAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATAGGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCa                                                                                 >  7:269487/1‑149 (MQ=255)                                                               aaaTCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                                                                              >  3:256168/1‑135 (MQ=255)                                                               aaaTCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTgg                                                                                              <  4:256168/135‑1 (MQ=255)                                                                              ccAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTg                                                                 >  2:38637/1‑149 (MQ=255)                                                                               cAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTgg                                                                >  1:143911/1‑149 (MQ=255)                                                                                        ccTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcgg                                                       <  1:38637/149‑1 (MQ=255)                                                                                         cTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcggc                                                      >  2:21557/1‑149 (MQ=255)                                                                                          ttacggcccagccctggccggcagatggccaggtccaggcgcccttcgtccagctgggcCGTAACGCCGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcggcg                                                     >  6:106356‑M2/60‑149 (MQ=255)                                                                                            cTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATACGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGggcggcg                                                     <  8:269487/147‑1 (MQ=255)                                                                                             tCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGCGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCa                                                  >  1:235606/1‑149 (MQ=255)                                                                                              ggcccagccctggccggcagatggccaggtccaggcgcccttcgtccagctgggcCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCAc                                                 >  6:253836‑M2/56‑149 (MQ=255)                                                                                                          gccggcagatggccaggtccaggcgcccttcgtccagctgggcCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAg                                       <  5:253836‑M2/104‑1 (MQ=255)                                                                                                          cGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCg                                     <  5:57259/149‑1 (MQ=255)                                                                                                                    cTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGTGACCTTAGCCa                           >  1:34040/1‑149 (MQ=255)                                                                                                                    cTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCa                           >  3:111884/1‑149 (MQ=255)                                                                                                                                   tGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGggtggt            <  4:251176/149‑1 (MQ=255)                                                                                                                                   tGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGggtggt            >  7:272894/1‑149 (MQ=255)                                                                                                                                   tGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATACGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGggtggt            >  5:220450/1‑149 (MQ=255)                                                                                                                                     ccGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGggtg              <  7:284520/145‑1 (MQ=255)                                                                                                                                          cAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGGGTGGTTTATCCg     >  2:253257/1‑149 (MQ=255)                                                                                                                                             ggCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGGGTGGTTTATCCGGcc  <  6:171343/149‑1 (MQ=255)                                                                                                                                             ggCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGGGTGGTTTATCCGGcc  <  2:206337/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             TATGCCCACACTGGTCAGCGCCCTCGGGCGCTTGCGCCGCAAACAGCCGCAGCTGGCAGTGGAAATCGCCGAGAATACCAGCGCCAACCTGCTCGCCCAGCTGGACGAAGGGCGCCTGGACCTGGCCATCTGCCGGCCAGGGCTGGGCCGTAACGCGGCGGAATATGGCTTTGTCGAACTGACCCAGGAGCCGTTGGCGGTGGTCGCGCATCCGCAGCATCCGCTGGCCGGGGCGGCGGCACTCAAGATCAGCGACCTTAGCCATTATCGCTGGGTGGTTTATCCGGCC  >  NC_002947/2883776‑2884064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.