New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2927523	38 (0.780)	3 (0.060)	3/248	NT	7.4%	coding (790/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	= 2927554	39 (0.840)					coding (821/2472 nt)	PP_2565	UvrD/REP family helicase

CACGTTCCATTCGCGCATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2927372‑2927523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGGCAGGC  <  NC_002947/2927554‑2927407                                                                                                                                                                                                                                                                                                              CACGTTCCATTCGCGCATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCC                                                                                                                                                          >  4:107068/1‑148                                                  GGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTC                                                                                                         <  1:198333/148‑1                                                                                                                CGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCA                                                                                                               <  7:146125/80‑1                                                                                                                CGACAGCAACCCGTTCGACCTGAGCCTGAACGATGCCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCA                                                                                                               >  8:146125/1‑80                                                                                                                                                  GCCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCG        >  3:151574/1‑149                                                                                                                                                   CCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGG       >  2:286384/1‑149                                                                                                                                                   CCCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGG       >  3:177036/1‑149                                                                                                                                                    CCAGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGG       >  6:284174/1‑148                                                                                                                                                      AGCAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGGCAG    >  6:272374/1‑149                                                                                                                                                        CAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGGCAGGC  <  5:296445/149‑1                                                                                                                                                                                                                                                                                                              CACGTTCCATTCGCGCATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2927372‑2927523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcAAGCTGCTGTAGCACTGGTTCAGCTGCTGGCGCTGGGCATCGTTCAGGCGCAGGTCGAACGGGTTGCTGTCGGCCTCGGCCTCACGCCCGGCAGGCATCTCGTGGCCCAGTGTTTCAAATGCACGCACCTGGCCGAAGCCCGGCAGGC  <  NC_002947/2927554‑2927407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.