New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2927523	38 (0.780)	3 (0.060)	3/248	NT	7.4%	coding (790/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	= 2927554	39 (0.840)					coding (821/2472 nt)	PP_2565	UvrD/REP family helicase

GCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGGCCGCCCAGCGCGACGAAGAA  >  NC_002947/2927407‑2927696                                                                                                                                                    |                                                                                                                                               gCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTg                                                                                                                                               <  5:296445‑M2/149‑2 (MQ=255)   cTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgct                                                                                                                                             >  6:272374‑M2/1‑146 (MQ=255)      ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctggg                                                                                                                                          >  3:177036‑M2/1‑143 (MQ=255)      ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctggg                                                                                                                                          >  2:286384‑M2/1‑143 (MQ=255)      ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgg                                                                                                                                           >  6:284174‑M2/1‑143 (MQ=255)       cGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggc                                                                                                                                         >  3:151574‑M2/1‑142 (MQ=255)           cTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCgaga                                                                                                                                     >  3:159360/1‑149 (MQ=255)                gCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCcg                                                                                                                                >  6:247452/1‑149 (MQ=255)                   aGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGt                                                                                                                             >  6:76453/1‑149 (MQ=255)                     gtgcgtgcATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGttt                                                                                                                           >  4:112492/1‑149 (MQ=255)                           gcATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGcc                                                                                                                       >  3:258812/1‑147 (MQ=255)                                    acacTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCgg                                                                                                            <  3:107068/149‑1 (MQ=255)                                          ggCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGtt                                                                                                      >  4:2611/1‑149 (MQ=255)                                            ccACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTgc                                                                                                    <  1:118963/149‑1 (MQ=255)                                             cACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTgcg                                                                                                   <  4:262456/149‑1 (MQ=255)                                                      cctgccGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAg                                                                                           <  5:76453/148‑1 (MQ=255)                                                         gccGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCtt                                                                                       >  8:99/1‑149 (MQ=255)                                                               cGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACt                                                                                 <  4:258812/149‑1 (MQ=255)                                                               cGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACt                                                                                 >  4:295407/1‑149 (MQ=255)                                                                   aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                                              <  4:159360/148‑1 (MQ=255)                                                                   aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                                              <  7:99/148‑1 (MQ=255)                                                                   aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAg                                                                             <  3:112492/149‑1 (MQ=255)                                                                                  gCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGAGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAAt                                                              <  8:273915/149‑1 (MQ=255)                                                                                   cAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAAt                                                              >  2:212534/1‑148 (MQ=255)                                                                                            cGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCTAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGAt                                                     <  8:66771/148‑1 (MQ=255)                                                                                               ccTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGc                                                 <  3:239731/149‑1 (MQ=255)                                                                                                   cgcCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGaa                                             <  3:2611/149‑1 (MQ=255)                                                                                                   cgcCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGaa                                             <  6:296445/149‑1 (MQ=255)                                                                                                      cTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                                              >  1:241011/1‑113 (MQ=255)                                                                                                      cTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                                              <  2:241011/113‑1 (MQ=255)                                                                                                       tGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAgcgc                                         >  5:90385/1‑149 (MQ=255)                                                                                                        gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggcc                                         <  1:198333‑M2/148‑104 (MQ=255)                                                                                                        gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAg                                               >  7:270248/1‑142 (MQ=255)                                                                                                        gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAg                                               <  8:270248/142‑1 (MQ=255)                                                                                                            gATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGcaca                                    <  5:247452/149‑1 (MQ=255)                                                                                                              tGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggctcaggtcgaacgggttgctgtcg                                                                                                       >  8:146125‑M2/1‑39 (MQ=255)                                                                                                              tGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcg                                                                                                       <  7:146125‑M2/80‑42 (MQ=255)                                                                                                                 ccAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGa                               <  3:295407/149‑1 (MQ=255)                                                                                                                       ccAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAgc                                           <  1:169644/131‑1 (MQ=255)                                                                                                                       ccAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAgc                                           >  2:169644/1‑131 (MQ=255)                                                                                                                            agcTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGgcc                    >  8:155326/1‑149 (MQ=255)                                                                                                                              cTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGgccgc                  >  6:300245/1‑149 (MQ=255)                                                                                                                              cTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGgccgc                  >  1:275741/1‑149 (MQ=255)                                                                                                                                gAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCg                                                                                                             <  8:102225/56‑1 (MQ=255)                                                                                                                                gAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGAAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGgccgcc                 >  8:136117/1‑148 (MQ=255)                                                                                                                                   ccAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTTGCCGCCCAgc             >  8:288177/1‑149 (MQ=255)                                                                                                                                          tACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGGCCGCCCAgc             <  2:269036/142‑1 (MQ=255)                                                                                                                                          tACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGGCCGCCCAgc             >  1:269036/1‑142 (MQ=255)                                                                                                                                              gcagcTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGGCCGCCCAGCGCGACgaagaa  <  5:300245/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCAATTGGCCGCCCAGCGCGACGAAGAA  >  NC_002947/2927407‑2927696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.