New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2927523	38 (0.780)	3 (0.060)	3/248	NT	7.4%	coding (790/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	= 2927554	39 (0.840)					coding (821/2472 nt)	PP_2565	UvrD/REP family helicase

GCGCATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCA  >  NC_002947/2927384‑2927671                                                                                                                                            |                                                                                                                                                     gcgcATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCagcagc                                                                                                                                             <  7:52714/149‑1 (MQ=255)   gcATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGAGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTg                                                                                                                                           <  8:238115/149‑1 (MQ=255)    cATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGa                                                                                                                                          <  3:10466/149‑1 (MQ=255)      tCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAAc                                                                                                                                        <  3:34953/149‑1 (MQ=255)          gCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGt                                                                                                                                    >  1:286384/1‑149 (MQ=255)           ccGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAg                                                                                                                                     <  6:55607/147‑1 (MQ=255)                     gcAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAGCCAGTGCTACagcagc                                                                                                                         >  8:125255/1‑149 (MQ=255)                     gcAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACagcagc                                                                                                                         >  7:66771/1‑149 (MQ=255)                        gCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTg                                                                                                                      <  5:296445‑M2/149‑2 (MQ=255)                          cTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgct                                                                                                                    >  6:272374‑M2/1‑146 (MQ=255)                             ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctggg                                                                                                                 >  2:286384‑M2/1‑143 (MQ=255)                             ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctggg                                                                                                                 >  3:177036‑M2/1‑143 (MQ=255)                             ccGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgg                                                                                                                  >  6:284174‑M2/1‑143 (MQ=255)                              cGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggc                                                                                                                >  3:151574‑M2/1‑142 (MQ=255)                                  cTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCgaga                                                                                                            >  3:159360/1‑149 (MQ=255)                                      ggCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttc                                                                                                         <  1:198333‑M1/148‑46 (MQ=255)                                       gCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCcg                                                                                                       >  6:247452/1‑149 (MQ=255)                                          aGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGt                                                                                                    >  6:76453/1‑149 (MQ=255)                                            gtgcgtgcATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGttt                                                                                                  >  4:112492/1‑149 (MQ=255)                                                  gcATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGcc                                                                                              >  3:258812/1‑147 (MQ=255)                                                           acacTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCgg                                                                                   <  3:107068/149‑1 (MQ=255)                                                                 ggCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGtt                                                                             >  4:2611/1‑149 (MQ=255)                                                                   ccACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCa                                                                                                                                      >  3:68894/1‑90 (MQ=255)                                                                   ccACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCa                                                                                                                                      <  4:68894/90‑1 (MQ=255)                                                                   ccACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTgc                                                                           <  1:118963/149‑1 (MQ=255)                                                                    cACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTgcg                                                                          <  4:262456/149‑1 (MQ=255)                                                                             cctgccGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAg                                                                  <  5:76453/148‑1 (MQ=255)                                                                                gccGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCtt                                                              >  8:99/1‑149 (MQ=255)                                                                                      cGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACt                                                        <  4:258812/149‑1 (MQ=255)                                                                                      cGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACt                                                        >  4:295407/1‑149 (MQ=255)                                                                                          aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                     <  7:99/148‑1 (MQ=255)                                                                                          aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                     <  4:159360/148‑1 (MQ=255)                                                                                          aggccgaggccgACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAg                                                    <  3:112492/149‑1 (MQ=255)                                                                                                    cgaCAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCaagctgctgtagcactggttcagctgctggcgctgggca                                                                                                               <  7:146125‑M1/80‑40 (MQ=255)                                                                                                    cgaCAGCAACCCGTTCGACCTGAGCCTGAACGATGCCCAGCaagctgctgtagcactggttcagctgctggcgctgggca                                                                                                               >  8:146125‑M1/1‑41 (MQ=255)                                                                                                         gCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGAGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAAt                                     <  8:273915/149‑1 (MQ=255)                                                                                                          cAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAAt                                     >  2:212534/1‑148 (MQ=255)                                                                                                                   cGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCTAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGAt                            <  8:66771/148‑1 (MQ=255)                                                                                                                      ccTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGc                        <  3:239731/149‑1 (MQ=255)                                                                                                                          cgcCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGaa                    <  3:2611/149‑1 (MQ=255)                                                                                                                          cgcCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGaa                    <  6:296445/149‑1 (MQ=255)                                                                                                                             cTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                     >  1:241011/1‑113 (MQ=255)                                                                                                                             cTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGaa                                                     <  2:241011/113‑1 (MQ=255)                                                                                                                              tGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAgcgc                >  5:90385/1‑149 (MQ=255)                                                                                                                               gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggcc                <  1:198333‑M2/148‑104 (MQ=255)                                                                                                                               gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAg                      >  7:270248/1‑142 (MQ=255)                                                                                                                               gAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAg                      <  8:270248/142‑1 (MQ=255)                                                                                                                                   gATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGcaca           <  5:247452/149‑1 (MQ=255)                                                                                                                                     tGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggctcaggtcgaacgggttgctgtcg                                                                              >  8:146125‑M2/1‑39 (MQ=255)                                                                                                                                     tGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcg                                                                              <  7:146125‑M2/80‑42 (MQ=255)                                                                                                                                      gCCCAGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccg        >  3:151574‑M1/1‑7 (MQ=255)                                                                                                                                       cccAGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccgg       >  2:286384‑M1/1‑6 (MQ=255)                                                                                                                                       cccAGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccgg       >  3:177036‑M1/1‑6 (MQ=255)                                                                                                                                        ccAGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccgg       >  6:284174‑M1/1‑5 (MQ=255)                                                                                                                                        ccAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGa      <  3:295407/149‑1 (MQ=255)                                                                                                                                          aGCaagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccggcag    >  6:272374‑M1/1‑3 (MQ=255)                                                                                                                                            caagctgctgtagcactggttcagctgctggcgctgggcatcgttcaggcgcaggtcgaacgggttgctgtcggcctcggcctcacgcccggcaggcatctcgtggcccagtgtttcaaatgcacgcacctggccgaagcccggcaggc  <  5:296445‑M1/149‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                     GCGCATCCTGCCGCTCGTGCGCAGCCTGCCGGGCTTCGGCCAGGTGCGTGCATTTGAAACACTGGGCCACGAGATGCCTGCCGGGCGTGAGGCCGAGGCCGACAGCAACCCGTTCGACCTGCGCCTGAACGATGCCCAGCGCCAGCAGCTGAACCAGTGCTACAGCAGCTTGCTGGGCGAGAGCCCGCGTTTTGCCGAGCTGGTCGGCCAGTTGCGCAGCGAAGCCTTGCAACTGAAGCCGCTGGACCCGAATAACCCCGATGTGCAGAAGCGCGCACAGGTGACCCA  >  NC_002947/2927384‑2927671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.