New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3158691	25 (0.510)	3 (0.060)	3/248	NT	11.0%	coding (710/2097 nt)	opuA	glycine betaine ABC transporter ATP‑binding protein/permease
	?	NC_002947	= 3158757	25 (0.540)					coding (776/2097 nt)	opuA	glycine betaine ABC transporter ATP‑binding protein/permease

CTTGCGCGGGCGTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3158537‑3158691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgggGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGGGTCACTAGCAGCGTCGTGATTCCCCGTTCGCGCACCAGTTGCAGGAATCGCCCCTGCAAATCGCGGCGG  <  NC_002947/3158757‑3158611                                                                                                                                                                                                                                                                                                                CTTGCGCGGGCGTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGA                                                                                                                                                           >  1:101745/1‑149                                                 CCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATA                                                                                                           >  2:13517/1‑149                                                                                GCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGT                                                                            <  1:13517/149‑1                                                                                      TGCAGGGGCGATTCCGGCAACTGGTGCGCGAACGGGGAAGCACGACGCTGCTAGTGACCCACGACCCGGGGTGCCGACCTGAATCTGCCGACCACCGCGCATGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGG                                                                       <  3:220012/148‑1                                                                                                                                                       CCGGGGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGGGTCACTAGCAGCGTCGTGATTCCCCGTTCGCGCACCAGTTGCAGGAATCGCCCCTGCAAATCGCGG     >  3:158947/1‑149                                                                                                                                                        CGGGGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGGGTCACTAGCAGCGTCGTGATTCCCCGTTCGCGCACCAGTTGCAGGAATCGCCCCTGCAAATCGCGGC    <  5:312202/149‑1                                                                                                                                                          GGGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGGGTCACTAGCAGCGTCGTGATTCCCCGTTCGCGCACCAGTTGCAGGAATCGCCCCTGCAAATCGCGGCGG  <  2:211941/149‑1                                                                                                                                                                                                                                                                                                                CTTGCGCGGGCGTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3158537‑3158691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgggGTGCCGACCTGAATCAGCCGACCACCGCGCAAGACGGCGATACGGTCTGCCAGACGTAACGCCTCACCCGGGTCGTGGGTCACTAGCAGCGTCGTGATTCCCCGTTCGCGCACCAGTTGCAGGAATCGCCCCTGCAAATCGCGGCGG  <  NC_002947/3158757‑3158611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.