New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3158691	25 (0.510)	3 (0.060)	3/248	NT	11.0%	coding (710/2097 nt)	opuA	glycine betaine ABC transporter ATP‑binding protein/permease
	?	NC_002947	= 3158757	25 (0.540)					coding (776/2097 nt)	opuA	glycine betaine ABC transporter ATP‑binding protein/permease

CCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCAGCGCGATCGACAAT  >  NC_002947/3158611‑3158904                                                                                                                                                   |                                                                                                                                                     ccgccgCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcc                                                                                                                                                    <  2:211941‑M2/149‑3 (MQ=255)   gccgcGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccg                                                                                                                                                  <  5:312202‑M2/149‑5 (MQ=255)    ccgcGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccgg                                                                                                                                                 >  3:158947‑M2/1‑144 (MQ=255)            tGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAAtt                                                                                                                                          <  8:9713/148‑1 (MQ=255)               aGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCtt                                                                                                                                      >  2:212001/1‑149 (MQ=255)                                         gAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGc                                                                                                            <  6:312202/149‑1 (MQ=255)                                                gAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGGCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTttc                                                                                                     <  5:158407/149‑1 (MQ=255)                                                 aaTCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGGGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTttct                                                                                                    <  3:258419/149‑1 (MQ=255)                                                                 gTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCa                                                                                   <  1:212001/149‑1 (MQ=255)                                                                   gACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCata                                                                                 >  2:45514/1‑149 (MQ=255)                                                                    aCCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCatat                                                                                >  6:92251/1‑149 (MQ=255)                                                                      ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCcgg                                                                                                                            <  1:161293/104‑1 (MQ=255)                                                                      ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCcgg                                                                                                                            >  2:161293/1‑104 (MQ=255)                                                                      ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCg                                                                              >  4:126914/1‑149 (MQ=255)                                                                      ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACAAGCGGCCGCATATCg                                                                              >  5:297114/1‑149 (MQ=255)                                                                      ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCATGCGCGGTGGTCGGCAGATTCAGGTCGGCACcccgggtcgtgggtcactagcagcgtcgtgcttccccgttcgcgcaccagttgccggaatcgcccctgca                                                                                <  3:220012‑M2/148‑71 (MQ=255)                                                                        aCGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGc                                                                            >  2:71065/1‑149 (MQ=255)                                                                           aCCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgc                                                                          <  1:13517‑M2/149‑77 (MQ=255)                                                                                   gAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGc                                                                 <  3:126914/149‑1 (MQ=255)                                                                                     ggCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTCTCGACGAGCGGCCGCATATCGGCCCGAGCATTGcg                                                                <  1:45514/149‑1 (MQ=255)                                                                                             gTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGc                                                       >  5:79665/1‑149 (MQ=255)                                                                                              tCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGcg                                                      <  5:92251/149‑1 (MQ=255)                                                                                                tGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGcgac                                                    >  7:90107/1‑149 (MQ=255)                                                                                                          tATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgcggcggatggtgggatccagtgcactgaaggg                                           >  2:13517‑M2/1‑42 (MQ=255)                                                                                                           aTCGCAGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCTCCCCGGGTGAATTGCTTGAACACCGGGCTGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCa                                          <  5:180504/148‑1 (MQ=255)                                                                                                            tCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGc                                        >  6:167504/1‑149 (MQ=255)                                                                                                             cGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGc                                        >  8:254045/1‑148 (MQ=255)                                                                                                                         cgGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTGGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCgg                           <  1:211941/149‑1 (MQ=255)                                                                                                                                      aTTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCa                <  7:254045/147‑1 (MQ=255)                                                                                                                                          aGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCAGCGCGa          >  6:228205/1‑149 (MQ=255)                                                                                                                                            gTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCAGCGCGATc        >  8:7674/1‑149 (MQ=255)                                                                                                                                            gTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCAGCGCGATc        <  8:90107/149‑1 (MQ=255)                                                                                                                                                  aCCCCGGGTGAAGTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGTCAGCGCGATCGACAAt  <  4:141696/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCT‑TCGACGAGCGGCCGCATATCGGCCCGAGCATTGCGTCGTCTAGCGACGAGGTGCTCAGCGAGCCAGCGTCGGCCGAGCTGCCAGCGCGATCGACAAT  >  NC_002947/3158611‑3158904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.