| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3158691 | 25 (0.510) | 3 (0.060) | 3/248 | NT | 11.0% | coding (710/2097 nt) | opuA | glycine betaine ABC transporter ATP‑binding protein/permease |
| ? | NC_002947 | = 3158757 | 25 (0.540) | coding (776/2097 nt) | opuA | glycine betaine ABC transporter ATP‑binding protein/permease | |||||
GTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCATATCGGCCCGAGCAT > NC_002947/3158548‑3158838 | gTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAgg > 2:49554/1‑149 (MQ=255) ttGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGc < 3:256915/149‑1 (MQ=255) gTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGtt < 4:70587/149‑1 (MQ=255) cAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTc > 4:158947/1‑149 (MQ=255) ctgctgATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTa < 2:101745/148‑1 (MQ=255) gctgATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCa > 3:263318/1‑139 (MQ=255) aTGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCCGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGt > 4:258419/1‑149 (MQ=255) cccTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGgtgccgacctgaatcagccgaccaccgcgcaagacggcgata > 2:13517‑M1/1‑107 (MQ=255) cTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCggtg > 7:9713/1‑149 (MQ=255) cTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCggtg < 1:49554/149‑1 (MQ=255) ttCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCggtgg > 3:141696/1‑149 (MQ=255) aCTGGATCCAACCATCCGCCGCGATTTGCAGGGGCGATTCCTGAAAATGGTGAGCGAACGGGGAATCACGACGCTGCTAGTCACCCACGACCCGGGTGAGGCGTTACGACTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGa > 6:180504/1‑149 (MQ=255) ccgccgCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcc < 2:211941‑M2/149‑3 (MQ=255) gccgcGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccg < 5:312202‑M2/149‑5 (MQ=255) ccgcGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccgg > 3:158947‑M2/1‑144 (MQ=255) gcgATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGgtgccgacctgaatcagccgaccaccgcgcaagacggcgatacggtctgccagacgtaacgcctcacccgggt < 1:13517‑M1/149‑74 (MQ=255) tGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAAtt < 8:9713/148‑1 (MQ=255) tGCAGGGGCGATTCCGGCAACTGGTGCGCGAACGGGGAAGCACGACGCTGCTAGTGACCCACGACCCGGGgtgccgacctgaatctgccgaccaccgcgcatgacggcgatacggtctgccagacgtaacgcctcacccgggtcgtgg < 3:220012‑M1/148‑79 (MQ=255) aGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCtt > 2:212001/1‑149 (MQ=255) cgcgAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGAtt < 7:152880/99‑1 (MQ=255) cgcgAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGAtt > 8:152880/1‑99 (MQ=255) gAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGc < 6:312202/149‑1 (MQ=255) gAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGGCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTttc < 5:158407/149‑1 (MQ=255) aaTCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGGGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTttct < 3:258419/149‑1 (MQ=255) gTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCa < 1:212001/149‑1 (MQ=255) gACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCata > 2:45514/1‑149 (MQ=255) aCCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCatat > 6:92251/1‑149 (MQ=255) ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCcgg > 2:161293/1‑104 (MQ=255) ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCcgg < 1:161293/104‑1 (MQ=255) ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCATATCg > 4:126914/1‑149 (MQ=255) ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACAAGCGGCCGCATATCg > 5:297114/1‑149 (MQ=255) ccACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCATGCGCGGTGGTCGGCAGATTCAGGTCGGCACcccgggtcgtgggtcactagcagcgtcgtgcttccccgttcgcgcaccagttgccggaatcgcccctgca < 3:220012‑M2/148‑71 (MQ=255) aCGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCATATCGGc > 2:71065/1‑149 (MQ=255) aCCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACcccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgc < 1:13517‑M2/149‑77 (MQ=255) ccGGGgtgccgacctgaatcagccgaccaccgcgcaagacggcgatacggtctgccagacgtaacgcctcacccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgcgg > 3:158947‑M1/1‑5 (MQ=255) cGGGgtgccgacctgaatcagccgaccaccgcgcaagacggcgatacggtctgccagacgtaacgcctcacccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgcggc < 5:312202‑M1/149‑146 (MQ=255) gggtgccgacctgaatcagccgaccaccgcgcaagacggcgatacggtctgccagacgtaacgcctcacccgggtcgtgggtcactagcagcgtcgtgattccccgttcgcgcaccagttgcaggaatcgcccctgcaaatcgcggcgg < 2:211941‑M1/149‑148 (MQ=255) | GTTGGTCACCAATCCTGACATTCTGCTGATGGACGAACCCTTCAGTGCACTGGATCCCACCATCCGCCGCGATTTGCAGGGGCGATTCCTGCAACTGGTGCGCGAACGGGGAATCACGACGCTGCTAGTGACCCACGACCCGGGTGAGGCGTTACGTCTGGCAGACCGTATCGCCGTCTTGCGCGGTGGTCGGCTGATTCAGGTCGGCACCCCGGGTGAATTGCTTGAACACCCGGCGGACGAAGGCGTGGCGGTTTTCTTCGACGAGCGGCCGCATATCGGCCCGAGCAT > NC_002947/3158548‑3158838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |