| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3221347 | 35 (0.720) | 3 (0.060) | 3/248 | NT | 8.6% | coding (1347/1653 nt) | PP_2823 | methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 3221378 | 31 (0.670) | coding (1316/1653 nt) | PP_2823 | methyl‑accepting chemotaxis transducer | |||||
CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3221200‑3221347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagacaTCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATTCAGCGCTCTGAACATGCCACGCAGACCCTGGAGGCGATTACCGGGGCCGTTCGCCAGATCGATGAGT < NC_002947/3221378‑3221232 CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGAC < 6:282683/147‑1CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGA < 5:72686/146‑1 ACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGC < 5:245577/130‑1 ACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGC > 6:245577/1‑130 GCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCAC < 8:246531/144‑1 CCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCA < 5:97391/123‑1 CCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCA > 6:97391/1‑123 AAGACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATT < 1:106458/86‑1 AAGACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATT > 2:106458/1‑86 ACATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATTCAGCGCTCTGAACATGCCACGCAGACCCTGGAGGCGATTACCGGGGCCGTTCGCCAGATCGATGAG < 7:9689/149‑1 CATCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATTCAGCGCTCTGAACATGCCACGCAGACCCTGGAGGCGATTACCGGGGCCGTTCGCCAGATCGATGAGT < 8:246468/149‑1 CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3221200‑3221347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagacaTCATCCAGCGCCTGCAAAACAGCGCCAGCAGTGTCTTGCACGCGATGAACCTGAACGGCGAAAAGGCCAGGTCAAGCATTCAGCGCTCTGAACATGCCACGCAGACCCTGGAGGCGATTACCGGGGCCGTTCGCCAGATCGATGAGT < NC_002947/3221378‑3221232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |