New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3221347	35 (0.720)	3 (0.060)	3/248	NT	8.6%	coding (1347/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221378	31 (0.670)					coding (1316/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

AACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCG  >  NC_002947/3221231‑3221524                                                                                                                                                    |                                                                                                                                                    aaCTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGgatga                                                                                                                                                     <  1:72356/148‑1 (MQ=255)  aCTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtg                                                                                                                                                   <  8:246468‑M2/149‑3 (MQ=255)   cTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgt                                                                                                                                                  <  7:9689‑M2/149‑4 (MQ=255)          atatGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTAATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGa                                                                                                                                            >  2:67473/4‑148 (MQ=255)                         ccGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGc                                                                                                                            >  5:92285/1‑149 (MQ=255)                             tAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTc                                                                                                                        <  7:246468/149‑1 (MQ=255)                                    cTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGGTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCt                                                                                                                 <  7:272549/149‑1 (MQ=255)                                       cAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTgg                                                                                                               <  4:298029/148‑1 (MQ=255)                                            tCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGACGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGATGTTTTGCAGGCGCTGGATGATTTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAgg                                                                                                         >  1:225714/1‑149 (MQ=255)                                                cccgatctGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTg                                                                                                      <  5:68316/141‑1 (MQ=255)                                                  tGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTgcgc                                                                                                   >  1:2764/1‑149 (MQ=255)                                                      aTGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAcc                                                                                                >  1:134556/1‑148 (MQ=255)                                                      aTGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCt                                                                                               >  5:284934/1‑149 (MQ=255)                                                         ttCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTg                                                                                                      >  6:68316/1‑139 (MQ=255)                                                             gagCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTATGGGCCAGGTTGCGCACCTCATCGGc                                                                                        >  7:241080/1‑149 (MQ=255)                                                                cgcTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGAc                                                                                     <  6:284934/149‑1 (MQ=255)                                                                 gcTGAATGCTGGACCTGGCCTTTTCGCCGTTCAGGTTCATGGGGTGCAAGAGACTGCTGGAGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACGTCATCTGCGAcc                                                                                    <  8:241080/149‑1 (MQ=255)                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtctt                                                                                                                                               <  1:106458‑M2/86‑7 (MQ=255)                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtctt                                                                                                                                               >  2:106458‑M2/1‑80 (MQ=255)                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACg                                                                                 <  2:192904/148‑1 (MQ=255)                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACg                                                                                 <  2:134556/148‑1 (MQ=255)                                                                     aaTGATTGACCTGGCCTTTTCGCCGTTCAGGTTCATATCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGAGCGGTGGAAGCGGTCGTTTTCTGGTCCATGTTGAGCAACTCATCGGCGACCACg                                                                                 <  2:197230/148‑1 (MQ=255)                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAc                                                                                                 >  8:15606/1‑124 (MQ=255)                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAc                                                                                                 <  7:15606/124‑1 (MQ=255)                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGcc                                                                         <  4:283516/148‑1 (MQ=255)                                                                                tGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGc                                                                     >  7:172364/1‑149 (MQ=255)                                                                                 ggCCTTTTCGCCGTTCAGGTTCATCGCATGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGcc                                                                    >  6:126315/1‑149 (MQ=255)                                                                                       ttCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTg                                                                <  8:9689/147‑1 (MQ=255)                                                                                            cGTGCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCa                                                         <  2:70903/149‑1 (MQ=255)                                                                                                          gcgTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTc                                          <  8:172364/149‑1 (MQ=255)                                                                                                            gTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggaggcgattaccggggccgttcgc                                              <  8:246531‑M2/144‑104 (MQ=255)                                                                                                             tGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggagg                                                                  >  6:97391‑M2/1‑40 (MQ=255)                                                                                                             tGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggagg                                                                  <  5:97391‑M2/123‑84 (MQ=255)                                                                                                                aaGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCCG‑CCCGTGCCGCTTCGATgcc                                    >  8:154384/1‑147 (MQ=255)                                                                                                                aaGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATggc                                    >  2:44000/1‑149 (MQ=255)                                                                                                                       tgctgGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGtt                              >  2:40187/1‑148 (MQ=255)                                                                                                                            gcgcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAgg                          <  1:40187/147‑1 (MQ=255)                                                                                                                               cTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAg                     <  5:126315/149‑1 (MQ=255)                                                                                                                                        aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt            >  6:302897/1‑149 (MQ=255)                                                                                                                                        aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt            <  5:302897/149‑1 (MQ=255)                                                                                                                                                gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGGTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGtt       <  1:67473/147‑1 (MQ=255)                                                                                                                                                  tgatgTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCg  <  2:2764/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AACTCATCGATCTGGCGAACGGCCCCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAG‑CCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCG  >  NC_002947/3221231‑3221524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.