New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3221347	35 (0.720)	3 (0.060)	3/248	NT	8.6%	coding (1347/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221378	31 (0.670)					coding (1316/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCG  >  NC_002947/3221200‑3221494                                                                                                                                                     |                                                                                                                                                    cTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGacac                                                                                                                                                    >  3:283516/1‑149 (MQ=255)                ggCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCTCGTGCAAGACACTGCTGGCGCTGtttt                                                                                                                                     <  7:191206/149‑1 (MQ=255)                        cGGCGTTTAACTCATCGATCTGGCGAACGGCCCGCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGgcg                                                                                                                              >  1:192904/1‑149 (MQ=255)                        cGGCGTTTAACTCATCGATCTGGCGAACGGCCCGCGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGgcg                                                                                                                              >  1:197230/1‑149 (MQ=255)                        cGGCGTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGgcgc                                                                                                                             <  6:39644/149‑1 (MQ=255)                            gTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCGGga                                                                                                                         <  2:149337/149‑1 (MQ=255)                             tttAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGgat                                                                                                                        <  5:126199/149‑1 (MQ=255)                              ttAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGGTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGgat                                                                                                                        >  8:272549/1‑148 (MQ=255)                                aaCTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGgatga                                                                                                                      <  1:72356/148‑1 (MQ=255)                                 aCTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtg                                                                                                                    <  8:246468‑M2/149‑3 (MQ=255)                                  cTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgt                                                                                                                   <  7:9689‑M2/149‑4 (MQ=255)                                         atatGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTAATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGa                                                                                                             >  2:67473/4‑148 (MQ=255)                                              gCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACAtcatccagcgcctgcaaaacagcgccagcagtgtcttgcac                                                                                                            <  8:246531‑M1/144‑42 (MQ=255)                                                        c‑cGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGc                                                                                             >  5:92285/1‑149 (MQ=255)                                                             tAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTc                                                                                         <  7:246468/149‑1 (MQ=255)                                                                   ccTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACAtcatccagcgcctgcaaaacagcgccagcagtgtcttgca                                                                                                             >  6:97391‑M1/1‑83 (MQ=255)                                                                   ccTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACAtcatccagcgcctgcaaaacagcgccagcagtgtcttgca                                                                                                             <  5:97391‑M1/123‑41 (MQ=255)                                                                    cTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGGTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCt                                                                                  <  7:272549/149‑1 (MQ=255)                                                                       cAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTgg                                                                                <  4:298029/148‑1 (MQ=255)                                                                            tCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGACGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGATGTTTTGCAGGCGCTGGATGATTTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAgg                                                                          >  1:225714/1‑149 (MQ=255)                                                                                cccgatctGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTg                                                                       <  5:68316/141‑1 (MQ=255)                                                                                  tGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTgcgc                                                                    >  1:2764/1‑149 (MQ=255)                                                                                      aTGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAcc                                                                 >  1:134556/1‑148 (MQ=255)                                                                                      aTGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCt                                                                >  5:284934/1‑149 (MQ=255)                                                                                         ttCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTg                                                                       >  6:68316/1‑139 (MQ=255)                                                                                             gagCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTATGGGCCAGGTTGCGCACCTCATCGGc                                                         >  7:241080/1‑149 (MQ=255)                                                                                                cgcTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGAc                                                      <  6:284934/149‑1 (MQ=255)                                                                                                 gcTGAATGCTGGACCTGGCCTTTTCGCCGTTCAGGTTCATGGGGTGCAAGAGACTGCTGGAGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACGTCATCTGCGAcc                                                     <  8:241080/149‑1 (MQ=255)                                                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtctt                                                                                                                <  1:106458‑M2/86‑7 (MQ=255)                                                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtctt                                                                                                                >  2:106458‑M2/1‑80 (MQ=255)                                                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACg                                                  <  2:134556/148‑1 (MQ=255)                                                                                                     aaTGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACg                                                  <  2:192904/148‑1 (MQ=255)                                                                                                     aaTGATTGACCTGGCCTTTTCGCCGTTCAGGTTCATATCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGAGCGGTGGAAGCGGTCGTTTTCTGGTCCATGTTGAGCAACTCATCGGCGACCACg                                                  <  2:197230/148‑1 (MQ=255)                                                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAc                                                                  >  8:15606/1‑124 (MQ=255)                                                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCAc                                                                  <  7:15606/124‑1 (MQ=255)                                                                                                             aCCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGcc                                          <  4:283516/148‑1 (MQ=255)                                                                                                                tGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGc                                      >  7:172364/1‑149 (MQ=255)                                                                                                                 ggCCTTTTCGCCGTTCAGGTTCATCGCATGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGcc                                     >  6:126315/1‑149 (MQ=255)                                                                                                                       ttCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTg                                 <  8:9689/147‑1 (MQ=255)                                                                                                                            cGTGCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCa                          <  2:70903/149‑1 (MQ=255)                                                                                                                                          gcgTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTc            <  8:172364/149‑1 (MQ=255)                                                                                                                                            gTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggaggcgattaccggggccgttcgc               <  8:246531‑M2/144‑104 (MQ=255)                                                                                                                                             tGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggagg                                   >  6:97391‑M2/1‑40 (MQ=255)                                                                                                                                             tGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGAtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggagg                                   <  5:97391‑M2/123‑84 (MQ=255)                                                                                                                                                aaGACAtcatccagcgcctgcaaaacagcgccagcagtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcatt                                                                     >  2:106458‑M1/1‑6 (MQ=255)                                                                                                                                                aaGACAtcatccagcgcctgcaaaacagcgccagcagtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcatt                                                                     <  1:106458‑M1/86‑81 (MQ=255)                                                                                                                                                aaGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCCGCCCGTGCCGCTTCGATgcc      >  8:154384/1‑147 (MQ=255)                                                                                                                                                aaGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATggc      >  2:44000/1‑149 (MQ=255)                                                                                                                                                   aCAtcatccagcgcctgcaaaacagcgccagcagtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggaggcgattaccggggccgttcgccagatcgatgag   <  7:9689‑M1/149‑147 (MQ=255)                                                                                                                                                    catcatccagcgcctgcaaaacagcgccagcagtgtcttgcacgcgatgaacctgaacggcgaaaaggccaggtcaagcattcagcgctctgaacatgccacgcagaccctggaggcgattaccggggccgttcgccagatcgatgagt  <  8:246468‑M1/149‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTCGTTGGTGAAACGGGCGATGCCGGCGTTTAACTCATCGATCTGGCGAACGGCCC‑CGGTAATCGCCTCCAGGGTCTGCGTGGCATGTTCAGAGCGCTGAATGCTTGACCTGGCCTTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCG  >  NC_002947/3221200‑3221494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.