New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3558296	26 (0.530)	4 (0.080)	4/256	NT	13.0%	coding (595/1422 nt)	PP_3142	sugar transferase
	?	NC_002947	= 3558333	28 (0.590)					coding (632/1422 nt)	PP_3142	sugar transferase

TCATCGGCAACGGTGACCTGGCCAACTTCCTCTATCAGAAAATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3558147‑3558296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCCCCAGCACCGG  <  NC_002947/3558333‑3558290                                                                                                                                                                                                    TCATCGTCAACGGTGACCTGGCCAACTTCCTCTATCAGAAAATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTG                                               <  2:265629/149‑1 TCATCGGCAACGGTGACCTGGCCAACTTCCCCTATCAGAAAATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGT                                                <  5:145877/148‑1                                    CAGAAAATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCC            >  2:140549/1‑149                                         AATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCCCCAG        >  4:138624/1‑148                                           TCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCCCCAGCAC     <  3:138624/149‑1                                              GCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTTGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCCCCAGCACCGG  <  1:140549/149‑1                                                                                                                                                                                                    TCATCGGCAACGGTGACCTGGCCAACTTCCTCTATCAGAAAATCAGCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3558147‑3558296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGGGCCACCAGCTCGTCGAGGTCGCCAATATGCCCCAGCACCGG  <  NC_002947/3558333‑3558290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.