New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3558296	26 (0.530)	4 (0.080)	4/256	NT	13.0%	coding (595/1422 nt)	PP_3142	sugar transferase
	?	NC_002947	= 3558333	28 (0.590)					coding (632/1422 nt)	PP_3142	sugar transferase

GCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGTTACGCCTGATCAACCATAG  >  NC_002947/3558192‑3558474                                                                                                                                              |                                                                                                                                              gCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCggcatgg                                                                                                                                         >  6:73404/1‑148 (MQ=255)   aacaacCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCggcatggcat                                                                                                                                      >  6:138541/1‑149 (MQ=255)         ccGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTAc                                                                                                                                >  7:59968/1‑149 (MQ=255)                            tGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGAcgccg                                                                                                             >  3:114559/1‑149 (MQ=255)                              cTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCt                                                                                                           <  5:138541/149‑1 (MQ=255)                                ggggTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTgg                                                                                                         >  6:311974/1‑149 (MQ=255)                                         ggtgCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTcc                                                                                                 >  6:120700/1‑148 (MQ=255)                                                         gATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGGCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGGTGGGGGGCTCCGAAGTCATCAACGAtgt                                                                                <  8:59968/149‑1 (MQ=255)                                                            gAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGt                                                                                                                                  >  2:24812/1‑96 (MQ=255)                                                            gAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGt                                                                                                                                  <  1:24812/96‑1 (MQ=255)                                                              gCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTAAGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACt                                                                           >  8:208624/1‑149 (MQ=255)                                                              gCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGCCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTAc                                                                            >  2:274917/1‑148 (MQ=255)                                                                aaGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTc                                                                         <  5:73404/149‑1 (MQ=255)                                                                       ggAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGc                                                                  <  5:311974/149‑1 (MQ=255)                                                                       ggAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGc                                                                  <  5:204898/149‑1 (MQ=255)                                                                                 gatggCAAGCAGCGCCTGCCGGGGCGGGGGCATATTGGCCACCTCGACGTGCTGGTGGCCCGGCATGGCATTCGTACGGTGAACCTGGGGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTg                                                        <  2:216923/146‑1 (MQ=255)                                                                                   aGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCa                                                      >  4:148102/1‑149 (MQ=255)                                                                                     gCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCAtt                                                    <  7:208624/149‑1 (MQ=255)                                                                                      cAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTg                                                   <  5:120700/149‑1 (MQ=255)                                                                                      cAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTg                                                   <  4:114559/149‑1 (MQ=255)                                                                                                cTGCCGGTGCTGGGTCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTg                                         <  1:274917/149‑1 (MQ=255)                                                                                                   ccGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGgcaccggcaggcgctgcttgccttcggcactttccggcccttgctcatcgcccttgtcaagcacaacgcaccccagcacccgctcgccaaaccacgggttgttgc                                      <  1:140549‑M2/149‑106 (MQ=255)                                                                                                      gTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGgcaccggcaggcgctgcttgccttcggcactttccggcccttgctcatcgcccttgtcaagcaccacgcaccccagcacccgctcgccaaaccacgggttgttgctga                                   <  3:138624‑M2/149‑109 (MQ=255)                                                                                                         cTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGgcaccggcaggcgctgcttgccttcggcactttccggcccttgctcatcgcccttgtcaagcaccacgcaccccagcacccgctcgccaaaccacgggttgttgctgatt                                 >  4:138624‑M2/1‑38 (MQ=255)                                                                                                            gggCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACAt                             >  4:97801/1‑149 (MQ=255)                                                                                                             ggCATATTGGCGACCTCGACGAGCTGGTGGCCCGgcaccggcaggcgctgcttgccttcggcactttccggcccttgctcatcgcccttgtcaagcaccacgcaccccagcacccgctcgccaaaccacgggttgttgctgattttctg                            >  2:140549‑M2/1‑34 (MQ=255)                                                                                                                   ttGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTtctc                       <  5:40875/148‑1 (MQ=255)                                                                                                                      gCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACaa                                                           <  4:129651/109‑1 (MQ=255)                                                                                                                      gCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACaa                                                           >  3:129651/1‑109 (MQ=255)                                                                                                                                      ggtggCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGt                     <  1:106671/131‑1 (MQ=255)                                                                                                                                      ggtggCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGt                     >  2:106671/1‑131 (MQ=255)                                                                                                                                       gtggCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGTTACGCCTGATCAACCATAg  >  5:204516/1‑149 (MQ=255)                                                                                                                                       gtggCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGTTACGCCTGATCAACCATAg  >  8:206293/1‑149 (MQ=255)                                                                                                                                          gCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGc                                    >  7:171960/1‑112 (MQ=255)                                                                                                                                          gCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGc                                    <  8:171960/112‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              GCAACAACCCGTGGTTTGGCGAGCGGGTGCTGGGGTGCGTGGTGCTTGACAAGGGCGATGAGCAAGGGCCGGAAAGTGCCGAAGGCAAGCAGCGCCTGCCGGTGCTGGGGCATATTGGCGACCTCGACGAGCTGGTGGCCCGGCATGGCATTCGTACGGTGTACCTGGTGACGCCGCTGGGGGGCTCCGAAGTCATCAACGATGTGTACTTCAAATTGCTCGACAAGTGCATTGCGGTCAATTGGGTGCCCGACATCTTCTCGTTACGCCTGATCAACCATAG  >  NC_002947/3558192‑3558474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.