| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3668197 = | 22 (0.450) | 3 (0.060) | 3/248 | NT | 11.8% | coding (490/1368 nt) | PP_3231 | hypothetical protein |
| ? | NC_002947 | 3668239 = | 24 (0.520) | coding (448/1368 nt) | PP_3231 | hypothetical protein | |||||
CGTGGAATTCCGCGGCCTGGATGTGTACAGCCTGCGCAATTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3668240‑3668197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC > NC_002947/3668239‑3668386 CGTGGAATTCCGCGGCCTGGATGTGTACAGCCTGCGCAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATA < 1:304764/148‑1CGTGGAATTCCGCGGCCTGGATGTGTACAGCCTGCGCAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATA > 2:304764/1‑148 GTGGAATTCCGCGGCCTGGATGTGTACAGCCTGCGCAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATG > 3:73350/1‑149 TTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTCACACGCCGAGTGCGCCAAGCCTCGGACGTAC < 1:27360/149‑1 ACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC < 1:21184/149‑1 ACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC > 2:48446/1‑149 ACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC > 2:97667/1‑149 CGTGGAATTCCGCGGCCTGGATGTGTACAGCCTGCGCAATTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3668240‑3668197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC > NC_002947/3668239‑3668386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |