New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3668197 =	22 (0.450)	3 (0.060)	3/248	NT	11.8%	coding (490/1368 nt)	PP_3231	hypothetical protein
	?	NC_002947	3668239 =	24 (0.520)					coding (448/1368 nt)	PP_3231	hypothetical protein

TACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC  >  NC_002947/3668091‑3668386                                                                                                                                                     |                                                                                                                                                     catattttcagccgttttccaacctggatgtggcgcaatagcgaagtcaaagccttcgcccaatggctgcacgggcacaaccgcctgctgcccaccgaccaccgcgTGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCAc                                                                                                                                                      >  3:73350‑M1/107‑149 (MQ=255)   tattttcagccgttttccaacctggatgtggcgcaatagcgaagtcaaagccttcgcccaatggctgcacgggcacaaccgcctgctgcccaccgaccaccgcgTGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCAcg                                                                                                                                                     <  1:304764‑M1/44‑1 (MQ=255)   tattttcagccgttttccaacctggatgtggcgcaatagcgaagtcaaagccttcgcccaatggctgcacgggcacaaccgcctgctgcccaccgaccaccgcgTGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCAcg                                                                                                                                                     >  2:304764‑M1/105‑148 (MQ=255)   cAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCAcg                                                                                                                                                     <  7:110424/148‑1 (MQ=255)         ggggTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCggtggt                                                                                                                                              <  4:72984/149‑1 (MQ=255)           ggTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCg                                                                                                                                            <  8:77864/149‑1 (MQ=255)            gtcgtcCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCgg                                                                                                                                           <  2:149583/149‑1 (MQ=255)                    gCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGgcag                                                                                                                                    >  6:265214/1‑148 (MQ=255)                          gCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCgg                                                                                                                             <  5:265214/149‑1 (MQ=255)                                  cAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGccc                                                                                                                     <  7:52327/149‑1 (MQ=255)                                      cGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGACGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGc                                                                                                                 >  7:70945/1‑149 (MQ=255)                                           cggcgACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCa                                                                                                            >  6:96420/1‑149 (MQ=255)                                                   ggCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGa                                                                                                    <  5:96420/149‑1 (MQ=255)                                                           gggCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCttt                                                                                             >  6:268414/1‑148 (MQ=255)                                                                           gACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTgcgc                                                                             >  4:165663/1‑148 (MQ=255)                                                                                       aTACGCAAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTg                                                                <  8:102124/149‑1 (MQ=255)                                                                                            ccAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGaaaa                                                           >  2:27360/1‑149 (MQ=255)                                                                                            ccAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGAGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGaaaa                                                           >  2:285385/1‑149 (MQ=255)                                                                                                   ttCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTg                                                     >  3:115939/1‑148 (MQ=255)                                                                                                         cgtggaattccgcggcctggatgtgtacagcctgcgcaattccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAata                                               >  2:304764‑M2/45‑148 (MQ=255)                                                                                                         cgtggaattccgcggcctggatgtgtacagcctgcgcaattccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAata                                               <  1:304764‑M2/104‑1 (MQ=255)                                                                                                          gtggaattccgcggcctggatgtgtacagcctgcgcaattccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATg                                             >  3:73350‑M2/44‑149 (MQ=255)                                                                                                                  gcgcAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTc                                      >  5:71657/1‑148 (MQ=255)                                                                                                                      aGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGc                                <  3:165663/149‑1 (MQ=255)                                                                                                                       ggCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGcc                               <  5:89548/149‑1 (MQ=255)                                                                                                                                 aTCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGa                             >  1:13288/1‑141 (MQ=255)                                                                                                                                 aTCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGa                             <  2:13288/141‑1 (MQ=255)                                                                                                                                 aTCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGcc                      >  6:114656/1‑148 (MQ=255)                                                                                                                                  tCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCaa                    <  6:71657/149‑1 (MQ=255)                                                                                                                                   ccAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAg                   >  6:64569/1‑149 (MQ=255)                                                                                                                                     aGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGcc                 >  2:21184/1‑149 (MQ=255)                                                                                                                                            ggAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACg          >  7:116215/1‑149 (MQ=255)                                                                                                                                                ttccaCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTCACACGCCGAGTGCGCCAAGCCTCGGACGTAc       <  1:27360‑M2/144‑1 (MQ=255)                                                                                                                                                    aCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATc  <  1:21184‑M2/148‑1 (MQ=255)                                                                                                                                                    aCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATc  >  2:97667‑M2/2‑149 (MQ=255)                                                                                                                                                    aCGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATc  >  2:48446‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCCGTGCAGCCATTGGGCGAAGGCTTTGACTTCGCTATTGCGCCACATCCAGGTTGGAAAACGGCTGAAAATATGGCGTTTC‑CACGCCGAGTGCGCCAAGCCTCGGACGTACTGATC  >  NC_002947/3668091‑3668386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.