New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3710437 =	46 (0.940)	3 (0.060)	3/248	NT	6.4%	coding (509/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D
	?	NC_002947	3710487 =	44 (0.950)					coding (459/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D

GCCGCCGCAAGGCAGCGCCAGCAAGCGCAGCCTGCTCGGCGAAGCCCCCCAGGTGTGCTGCCCGCAATGCGGCAGCGCCCATACCGAATTGCTCAGCCAGTTCGGCTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3710589‑3710437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATC  >  NC_002947/3710487‑3710634                                                                                                                                                                                                                                                                                                               GCCGCCGCAAGGCAGCGCCAGCAAGCGCAGCCTGCTCGGCGAAGCCCCCCAGGTGTGCTGCCCGCAATGCGGCAGCGCCCATACCGAATTGCTCAGCCAGTTCGGCTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTG                                                                                                                                                           >  7:100706/1‑148                                                                                                         GCTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTGGAGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGC                                                               <  3:132727/136‑1                                                                                                         GCTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTGGAGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGC                                                               >  4:132727/1‑136                                                                                                          CTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTGGAGCAGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCG                                                 >  4:8282/1‑149                                                                                                                                                   TGGAGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCAGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCG        <  8:288525/149‑1                                                                                                                                                        CCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGAT   >  7:147023/1‑149                                                                                                                                                         CGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATC  <  5:241531/149‑1                                                                                                                                                                                                                                                                                                               GCCGCCGCAAGGCAGCGCCAGCAAGCGCAGCCTGCTCGGCGAAGCCCCCCAGGTGTGCTGCCCGCAATGCGGCAGCGCCCATACCGAATTGCTCAGCCAGTTCGGCTCCACGGCCTGCAAGGCGCTGTACCGCTGCCGCGAGTGCCTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3710589‑3710437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATC  >  NC_002947/3710487‑3710634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.