New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3710437 =	46 (0.940)	3 (0.060)	3/248	NT	6.4%	coding (509/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D
	?	NC_002947	3710487 =	44 (0.950)					coding (459/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D

GAAGCGGAACTGGCCCTGCAGGTGCTCGGGCACATCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCG  >  NC_002947/3710289‑3710584                                                                                                                                                     |                                                                                                                                                     gatcaccgaactgggccgcgagcgcctgcgcgcttatggcattgcgccgccgcaaggcagcgccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcg                                                                                                                                                      <  5:241531‑M1/1‑1 (MQ=255)  atcaccgaactgggccgcgagcgcctgcgcgcttatggcattgcgccgccgcaaggcagcgccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcgg                                                                                                                                                     >  7:147023‑M1/148‑149 (MQ=255)       cgaactgggccgcgagcgcctgcgcgcttatggcattgcgctgccgcaaggcagcgccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcGGCTCCa                                                                                                                                                <  8:288525‑M1/7‑1 (MQ=255)           tGGCCCTGCAGGTGCTCGGGCACATCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCa                                                                                                                                            >  2:177402/1‑149 (MQ=255)             gCCCTGCAGGTGCTCGGGCCCATCGAAGGCAATCGATACCGCATCACGGGGCTCATTGCGCACTTGCTTGATGTTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTAAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACt                                                                                                                                          >  2:273046/1‑149 (MQ=255)                      gTGCTCGGGCACATCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGc                                                                                                                                 >  7:246658/1‑149 (MQ=255)                                  aTCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCt                                                                                                                     >  8:74137/1‑149 (MQ=255)                                  aTCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCt                                                                                                                     >  8:20579/1‑149 (MQ=255)                                     gAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGc                                                                                                                  <  1:273046/149‑1 (MQ=255)                                       aGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCa                                                                                                                 <  8:128810/148‑1 (MQ=255)                                        ggCAATCGATCCGGCATAACGGGGCTCATTCCGCAGTTGCTTGATGGTCAGGCTGTTAAACTGGCTCATGGTGGTCTCCAGGGTTCAAATGCTTTTGAAATTGTCGAATGGCTCCAGGCACTCGCGGCAGCTGTACTGCGCGTTGCAgg                                                                                                               <  2:88905/149‑1 (MQ=255)                                           aaTCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCg                                                                                                            >  3:226809/1‑149 (MQ=255)                                            aTCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGt                                                                                                           <  6:135263/149‑1 (MQ=255)                                              cGATACCGCATCACCGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGAACTCGCCCCAGCGGTACAGCGCCTTGCAGGCCGTg                                                                                                          >  6:135850/1‑148 (MQ=255)                                                cgccgcaaggcagcgccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcTGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑Ag                                                                                                      >  4:8282‑M1/102‑149 (MQ=255)                                                aTACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑Ag                                                                                                      <  7:251610/149‑1 (MQ=255)                                                aTACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑Ag                                                                                                      >  1:115027/1‑149 (MQ=255)                                                aTACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑Ag                                                                                                      >  4:280767/1‑149 (MQ=255)                                                   ccGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGcc                                                                                                    <  4:226809/148‑1 (MQ=255)                                                    cGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCg                                                                                                   >  6:241531/1‑148 (MQ=255)                                                    cGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCg                                                                                                   >  4:56068/1‑148 (MQ=255)                                                       aTCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACt                                                                                               <  7:20579/149‑1 (MQ=255)                                                           cGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCt                                                                                           <  3:5160/149‑1 (MQ=255)                                                            gggTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCt                                                                                           >  1:144404/1‑148 (MQ=255)                                                              gccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGc                                                                                                     >  4:132727‑M1/88‑136 (MQ=255)                                                              gccagcaagcgcagcctgctcggcgaagccccccaggtgtgctgcccgcaatgcggcagcgcccataccgaattgctcagccagttcGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGc                                                                                                     <  3:132727‑M1/49‑1 (MQ=255)                                                                   aTTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAAtt                                                                                   <  7:74137/149‑1 (MQ=255)                                                                        gcACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTa                                                                              >  4:69363/1‑149 (MQ=255)                                                                          aCTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATg                                                                            >  6:67002/1‑149 (MQ=255)                                                                                ttgATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCt                                                                      >  2:79910/1‑149 (MQ=255)                                                                                   aTGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAg                                                                                                                                  <  5:113413/87‑1 (MQ=255)                                                                                   aTGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAg                                                                                                                                  >  6:113413/1‑87 (MQ=255)                                                                                    tGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCg                                                                  <  1:177402/149‑1 (MQ=255)                                                                                      ggcAGGCTGTGAAACTGGCTCATGGTGGTCGCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                 <  4:254271/146‑1 (MQ=255)                                                                                      gTCAGGCTGTGAAACTGGCTCAGGGGGGTCTCCACGGCTCAAATGCATTTGAAATAGGCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGGGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                 <  4:258618/148‑1 (MQ=255)                                                                                               tgAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCggg                                                         >  5:201652/1‑147 (MQ=255)                                                                                                    cTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTTAAATAGGCGAATGGCTCCAGGCACTCGCGGCAGCGGTACATCGCCTTGCAGGCCGTGGCCGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGcac                                                   <  1:79910/149‑1 (MQ=255)                                                                                                           aTGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTgggg                                           >  6:151882/1‑149 (MQ=255)                                                                                                           aTGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTggg                                            <  3:280767/148‑1 (MQ=255)                                                                                                                 gtCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTc                                     >  4:254958/1‑149 (MQ=255)                                                                                                                      cACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGcc                                  <  3:56068/147‑1 (MQ=255)                                                                                                                      cACGGCGCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGGCGCATTGCGGGCAGCACACCTGGGGGGCTTCGcc                                  <  2:115027/147‑1 (MQ=255)                                                                                                                          gCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAg                            >  2:50143/1‑149 (MQ=255)                                                                                                                           cTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGTCCGTGG‑AGCCGAACTGGCTGAGCAATTCTGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                           <  5:135850/149‑1 (MQ=255)                                                                                                                           cTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                           <  8:246658/149‑1 (MQ=255)                                                                                                                            tCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                           >  8:159662/1‑148 (MQ=255)                                                                                                                                 tGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTgcgc                     <  5:67002/149‑1 (MQ=255)                                                                                                                                        gAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTgg              >  3:206043/1‑149 (MQ=255)                                                                                                                                         aaaTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGgc             >  7:288525/1‑149 (MQ=255)                                                                                                                                           aTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCg                                    >  3:18524/1‑124 (MQ=255)                                                                                                                                           aTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCg                                    <  4:18524/124‑1 (MQ=255)                                                                                                                                              gTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGc        >  5:240466/1‑149 (MQ=255)                                                                                                                                                 gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                 >  6:159819/1‑89 (MQ=255)                                                                                                                                                 gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                 <  5:159819/89‑1 (MQ=255)                                                                                                                                                 gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCtt     >  8:100706/1‑149 (MQ=255)                                                                                                                                                   aTGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGc                                                            <  4:281820/92‑1 (MQ=255)                                                                                                                                                   aTGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGc                                                            >  3:281820/1‑92 (MQ=255)                                                                                                                                                    tGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTgcg  <  6:201652/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAAGCGGAACTGGCCCTGCAGGTGCTCGGGCACATCGAAGGCAATCGATACCGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCG  >  NC_002947/3710289‑3710584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.