New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3710437 =	46 (0.940)	3 (0.060)	3/248	NT	6.4%	coding (509/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D
	?	NC_002947	3710487 =	44 (0.950)					coding (459/534 nt)	paaD	1,2‑phenylacetyl‑CoA epoxidase subunit D

CGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATC  >  NC_002947/3710340‑3710634                                                                                                                                                     |                                                                                                                                                    cGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCg                                                                                                                                                     >  6:241531/1‑148 (MQ=255) cGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCg                                                                                                                                                     >  4:56068/1‑148 (MQ=255)    aTCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACt                                                                                                                                                 <  7:20579/149‑1 (MQ=255)        cGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCt                                                                                                                                             <  3:5160/149‑1 (MQ=255)         gggTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCt                                                                                                                                             >  1:144404/1‑148 (MQ=255)                aTTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAAtt                                                                                                                                     <  7:74137/149‑1 (MQ=255)                     gcACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTa                                                                                                                                >  4:69363/1‑149 (MQ=255)                       aCTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATg                                                                                                                              >  6:67002/1‑149 (MQ=255)                             ttgATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCt                                                                                                                        >  2:79910/1‑149 (MQ=255)                                 tGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCg                                                                                                                    <  1:177402/149‑1 (MQ=255)                                   ggcAGGCTGTGAAACTGGCTCATGGTGGTCGCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                                                                   <  4:254271/146‑1 (MQ=255)                                   gTCAGGCTGTGAAACTGGCTCAGGGGGGTCTCCACGGCTCAAATGCATTTGAAATAGGCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGGGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                                                                   <  4:258618/148‑1 (MQ=255)                                            tgAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCggg                                                                                                           >  5:201652/1‑147 (MQ=255)                                                 cTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTTAAATAGGCGAATGGCTCCAGGCACTCGCGGCAGCGGTACATCGCCTTGCAGGCCGTGGCCGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGcac                                                                                                     <  1:79910/149‑1 (MQ=255)                                                        aTGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTgggg                                                                                             >  6:151882/1‑149 (MQ=255)                                                        aTGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTggg                                                                                              <  3:280767/148‑1 (MQ=255)                                                              gtCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTc                                                                                       >  4:254958/1‑149 (MQ=255)                                                                   cACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGcc                                                                                    <  3:56068/147‑1 (MQ=255)                                                                   cACGGCGCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGGCGCATTGCGGGCAGCACACCTGGGGGGCTTCGcc                                                                                    <  2:115027/147‑1 (MQ=255)                                                                       gCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAg                                                                              >  2:50143/1‑149 (MQ=255)                                                                        cTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGTCCGTGG‑AGCCGAACTGGCTGAGCAATTCTGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                                                                             <  5:135850/149‑1 (MQ=255)                                                                        cTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                                                                             <  8:246658/149‑1 (MQ=255)                                                                         tCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAgg                                                                             >  8:159662/1‑148 (MQ=255)                                                                              tGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTgcgc                                                                       <  5:67002/149‑1 (MQ=255)                                                                                     gAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTgg                                                                >  3:206043/1‑149 (MQ=255)                                                                                      aaaTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGgc                                                               >  7:288525/1‑149 (MQ=255)                                                                                        aTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCg                                                                                      <  4:18524/124‑1 (MQ=255)                                                                                        aTAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCg                                                                                      >  3:18524/1‑124 (MQ=255)                                                                                           gTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGc                                                          >  5:240466/1‑149 (MQ=255)                                                                                              gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                                                                   >  6:159819/1‑89 (MQ=255)                                                                                              gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGc                                                                                                                   <  5:159819/89‑1 (MQ=255)                                                                                              gAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCtt                                                       >  8:100706/1‑149 (MQ=255)                                                                                                aTGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGc                                                                                                              >  3:281820/1‑92 (MQ=255)                                                                                                aTGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGc                                                                                                              <  4:281820/92‑1 (MQ=255)                                                                                                 tGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTgcg                                                    <  6:201652/149‑1 (MQ=255)                                                                                                    gctccacggcctgcaaggcgctgtaccgctgccgcgagtgcctggagccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGgc                                                               <  3:132727‑M2/87‑1 (MQ=255)                                                                                                    gctccacggcctgcaaggcgctgtaccgctgccgcgagtgcctggagccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGgc                                                               >  4:132727‑M2/50‑136 (MQ=255)                                                                                                     ctccacggcctgcaaggcgctgtaccgctgccgcgagtgcctggagcaGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTgcggcg                                                 >  4:8282‑M2/49‑149 (MQ=255)                                                                                                       CAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTgcggcggc                                               >  7:100706‑M1/1‑148 (MQ=255)                                                                                                           cACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAAt                                          <  5:151882/149‑1 (MQ=255)                                                                                                            aCTCGCGGCAGCGGTACAGCGCCTTGCAGGCCTTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTg                                                      <  1:256330/136‑1 (MQ=255)                                                                                                            aCTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTg                                                      >  2:256330/1‑136 (MQ=255)                                                                                                                 cgGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATa                                    <  6:240466/149‑1 (MQ=255)                                                                                                                     aGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAgcg                                >  1:298933/1‑149 (MQ=255)                                                                                                                     aGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAgcg                                >  2:238718/1‑149 (MQ=255)                                                                                                                      gCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAgcgc                               >  3:127861/1‑149 (MQ=255)                                                                                                                              gcgcCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGgcgc                       <  3:254958/149‑1 (MQ=255)                                                                                                                              gcgcCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGgcg                        >  8:142219/1‑148 (MQ=255)                                                                                                                                  cTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTcgc                   <  2:298933/149‑1 (MQ=255)                                                                                                                                     gCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGc                >  7:270372/1‑149 (MQ=255)                                                                                                                                     gCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGc                >  5:109805/1‑149 (MQ=255)                                                                                                                                         gCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAACCGCGCAGGCGCTCGCGGCCCAg            >  3:77347/1‑149 (MQ=255)                                                                                                                                              tggagccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCAGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCg        <  8:288525‑M2/142‑1 (MQ=255)                                                                                                                                                   ccGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGAt   >  7:147023‑M2/3‑149 (MQ=255)                                                                                                                                                    cGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATc  <  5:241531‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGCATCACGGGTCTCATTGCGCACTTGCTTGATGGTCAGGCTGTGAAACTGGCTCATGGTGGTCTCCACGGCTCAAATGCATTTGAAATAGTCGAATGGCTCCAGGCACTCGCGGCAGCGGTACAGCGCCTTGCAGGCCGTGG‑AGCCGAACTGGCTGAGCAATTCGGTATGGGCGCTGCCGCATTGCGGGCAGCACACCTGGGGGGCTTCGCCGAGCAGGCTGCGCTTGCTGGCGCTGCCTTGCGGCGGCGCAATGCCATAAGCGCGCAGGCGCTCGCGGCCCAGTTCGGTGATC  >  NC_002947/3710340‑3710634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.