New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3714765	48 (0.980)	4 (0.090)	4/252	NT	7.6%	coding (1091/1221 nt)	paaJ	3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
	?	NC_002947	= 3714854	51 (1.080)					coding (1002/1221 nt)	paaJ	3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase

ACAAGCGCAGGGTCTGAACCGCTCAGAGGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3714613‑3714765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAACGGC  <  NC_002947/3714854‑3714708                                                                                                                                                                                                                                                                                                              ACAAGCGCAGGGTCTGAACCGCTCAGAGGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATG                                                                                                                                                         >  7:102604/1‑149   AAGCGCAGGGTCTGAACCGCTCAGAGGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCC                                                                                                                                                       >  4:297113/1‑149                            GGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATG                                                                                                                                                         <  1:150715/122‑1                            GGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATG                                                                                                                                                         >  2:150715/1‑122                                                                      ACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCG                                                                                    >  1:140615/1‑149                                                                                             CCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCC                                                             <  2:140615/149‑1                                                                                                               TCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCC                                                            >  7:235636/1‑132                                                                                                               TCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCC                                                            <  8:235636/132‑1                                                                                                                                                     GCCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAAC     <  1:103441/149‑1                                                                                                                                                      CCCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAACG    <  7:207666/149‑1                                                                                                                                                       CCAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAACGG   >  7:143588/1‑149                                                                                                                                                        CAAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAACGGC  >  1:50690/1‑149                                                                                                                                                                                                                                                                                                              ACAAGCGCAGGGTCTGAACCGCTCAGAGGCGCTCGATGATCATGGCAATGCCTTGGCCTACGCCGATGCACATGGTGCACAGGGCGTAGCGGCCGGCCGTTTCTTCAAGCTCGTGCAAGGCAGTGGTCACCAACCGGGCACCGCTCATGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3714613‑3714765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaAGGGCTGGCCGTGTTGCGCGAGCTGGGCCTGGCCGACGACGACCCGCGAGTCAACCGCAACGGCGGCGCCATCGCCCTGGGCCATCCCCTGGGCATGAGCGGTGCCCGGTTGGTGACCACTGCCTTGCACGAGCTTGAAGAAACGGC  <  NC_002947/3714854‑3714708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.