New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3861513	46 (0.940)	6 (0.130)	5/246	NT	12.1%	coding (436/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3861577	44 (0.960)					coding (500/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator

CCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3861361‑3861513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgatcgACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAGGTCGTCGGCATAGGGGGTGCTGAGGCTTAGCTGGGCGTCCGCCGCCTCGAAGGCGTTGGA  <  NC_002947/3861577‑3861441                                                                                                                                                                                                                                                                                                    CCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGT                                                                                                                                                >  3:8476/1‑148  CATTGAAGTACGTCGTTTTGACAGCCGTAACGAGGACATCACTGCCCTGCGTGATGGCCGTATCGAGTTGTTGGGTAACTCCAACGCCTTCGAGGCGGAGGAAGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGA                                                                                                                                              <  4:157913/149‑1   ATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGAT                                                                                                                                             >  4:57896/1‑149      GAAGTACGTCGTTTTGAGAGCCGTCACTAGGCCATCAGTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCGAACGCCTTCGAGGCGGCGGACGCCGATCTAAGGCTCAGCACCCCGTATGCCGACGTCCTGCCAGTGATgg                                                                                                                                           <  7:293316/148‑3       AAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCAACAGCACCCCCAATGCCGACGACCTGCCACTGAaaga                                                                                                                                          >  7:191784/1‑144                               ACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAG                                                                                                                 >  7:76861/1‑149                                                                 CGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGG                                                                               >  1:276728/1‑149                                                                     TTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGA                                                                           >  5:248259/1‑149                                                                           GGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCA                                                                     <  2:276728/149‑1                                                                                   CAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAG                                                              <  6:248259/148‑1                                                                                   CAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAG                                                              <  8:76861/148‑1                                                                                                                                                  AGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAGGTCGTCGGCATAGGGGGTGCTGAGGCTTAGCTGGGCGTCCGCCGCCTCGAAGGCGTTGGA  <  1:110197/145‑1                                                                                                                                                  AGTGATCGACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAGGTCGTCGGCATAGGGGGTGCTGAGGCTTAGCTGGGCGTCCGCCGCCTCGAAGGCGTTGGA  >  2:110197/1‑145                                                                                                                                                                                                                                                                                                    CCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGACTTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3861361‑3861513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgatcgACCATCGCCAGGCGCAGGCCGGCGAGCTCGGGCGTACTTTTCAAGCTGCGCCCTTCACGGGTGACGATCACTGGCAGGTCGTCGGCATAGGGGGTGCTGAGGCTTAGCTGGGCGTCCGCCGCCTCGAAGGCGTTGGA  <  NC_002947/3861577‑3861441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.