New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3861513	46 (0.940)	6 (0.130)	5/246	NT	12.1%	coding (436/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3861577	44 (0.960)					coding (500/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator

TTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATGCCATCAGCACTGACTACAT  >  NC_002947/3861429‑3861724                                                                                                                                                     |                                                                                                                                                    ttgttgGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGt                                                                                                                                                     >  5:153202/1‑149 (MQ=255)  ttttgGGTAGCTCCAACGCCTTCGAGGCGGCGTACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGt                                                                                                                                                     <  8:191784/146‑1 (MQ=255)             tCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcact                                                                                                                                             <  1:110197‑M2/145‑9 (MQ=255)             tCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcact                                                                                                                                             >  2:110197‑M2/1‑137 (MQ=255)             tCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTAc                                                                                                                                           >  4:185303/1‑147 (MQ=255)             tCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTAc                                                                                                                                           <  3:185303/147‑1 (MQ=255)               cAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTgc                                                                                                                                       >  8:95058/1‑149 (MQ=255)               cAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTgc                                                                                                                                       >  4:119103/1‑149 (MQ=255)                  cGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTgccgg                                                                                                                                    <  3:107867/149‑1 (MQ=255)                    ccTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTgccggcc                                                                                                                                  >  5:139986/1‑149 (MQ=255)                                     gCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACt                                                                                                                 >  3:171294/1‑149 (MQ=255)                                       ccAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATCGTCGATCACTACCTGCCGGCCGTCAGCGTACGcaacctg                                                                                                                >  8:131061/1‑143 (MQ=255)                                       ccAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTCCGCCTGGCGATGCTCGATCACTACCTCCCGGCCGTCAGCGTTCGcaccaag                                                                                                                >  8:127128/1‑144 (MQ=255)                                          gCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTAcc                                                                                                            >  7:146445/1‑149 (MQ=255)                                               gCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGTGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAg                                                                                                       <  7:127128/149‑1 (MQ=255)                                               gCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAg                                                                                                       <  7:131061/149‑1 (MQ=255)                                                 cTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGgc                                                                                                     >  1:284374/1‑149 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAg                                                                                                       <  1:215305/139‑1 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAg                                                                                                       >  2:215305/1‑139 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACt                                                                                               >  2:103577/1‑147 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGa                                                                                             >  3:147821/1‑149 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGa                                                                                             >  8:148859/1‑149 (MQ=255)                                                         ccccTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGa                                                                                             <  6:153202/149‑1 (MQ=255)                                                                     cgacCTGCCAGTGATCGTCACCCGTGAAGGGCTCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCt                                                                                 <  4:147821/149‑1 (MQ=255)                                                                      gacCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTc                                                                                >  5:294196/1‑149 (MQ=255)                                                                       acCTGGCAGTGATCGTCACCCGTGAAGGGCGCATCTTGAAAAGTACGCCCGATCTCGCCGGCCTGCGCCTGGCGATTGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCg                                                                               <  5:111946/149‑1 (MQ=255)                                                                        ccTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGa                                                                              >  8:139855/1‑149 (MQ=255)                                                                         cTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttg                                                                              <  8:76861‑M2/148‑72 (MQ=255)                                                                         cTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttg                                                                              <  6:248259‑M2/148‑72 (MQ=255)                                                                            ccAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGAcc                                                                            <  8:18413/147‑1 (MQ=255)                                                                               gTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGc                                                                       >  5:249286/1‑149 (MQ=255)                                                                                tGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttggagctacc                                                                      <  2:276728‑M2/149‑80 (MQ=255)                                                                                tGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGAcccggcca                                                                      <  4:171294/149‑6 (MQ=255)                                                                                  aTCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCgg                                                                    >  4:756/1‑149 (MQ=255)                                                                                  aTCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCgg                                                                    <  7:148859/149‑1 (MQ=255)                                                                                     gTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGc                                                                  <  6:209535/148‑1 (MQ=255)                                                                                      tCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttggagctacccaacaa                                                                >  5:248259‑M2/1‑64 (MQ=255)                                                                                        aCCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGc                                                              >  8:20629/1‑149 (MQ=255)                                                                                          ccGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttggagctacccaacaagtcg                                                            >  1:276728‑M2/1‑60 (MQ=255)                                                                                          ccGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTg                                                            <  1:103577/149‑1 (MQ=255)                                                                                                aGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTgg                                                      <  2:284374/149‑1 (MQ=255)                                                                                                  ggCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGcctcgcc                                                     >  5:21905/1‑143 (MQ=255)                                                                                                   gcgcAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGgcgc                                                   >  8:192592/1‑149 (MQ=255)                                                                                                            gAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAg                                           <  7:192592/148‑1 (MQ=255)                                                                                                             aaaaGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAgg                                          <  3:756/148‑1 (MQ=255)                                                                                                              aaaGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGgcgc                                                                                                   <  6:312826/90‑1 (MQ=255)                                                                                                              aaaGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGgcgc                                                                                                   >  5:312826/1‑90 (MQ=255)                                                                                                                aGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGa                                      <  7:20629/149‑1 (MQ=255)                                                                                                                    cGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGc                                   <  1:195525/148‑1 (MQ=255)                                                                                                                            cTCGCCGGCCTGCGCCTGGCGATGGTcgatcactggcaggtcgtcggcatagggggtgctgaggcttagctgggcgtccgccgcctcgaaggcgttggagctacccaacaagtcgatacggccatcacgcagggcagtgatggcctcgt                          >  7:76861‑M2/1‑26 (MQ=255)                                                                                                                               gCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGa                       >  3:268374/1‑149 (MQ=255)                                                                                                                                     cTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATg                     >  4:233689/1‑145 (MQ=255)                                                                                                                                     cTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATg                     <  3:233689/145‑1 (MQ=255)                                                                                                                                        cgcCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATGCCATc                <  2:133784/147‑1 (MQ=255)                                                                                                                                        cgcCTGGCGATGGGCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATGCCATCa               <  8:146445/148‑1 (MQ=255)                                                                                                                                          ccTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATGCCATCAGCa            <  7:139855/149‑1 (MQ=255)                                                                                                                                                     tCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTCAGCCTGTACCGCTCGACCCTGGCCGCGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGCCGATGCCATCAGCACTGACTACAt  >  4:79164/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTGTTGGGTAGCTCCAACGCCTTCGAGGCGGCGGACGCCCAGCTAAGCCTCAGCACCCCCTATGCCGACGACCTGCCAGTGATCGTCACCCGTGAAGGGCGCAGCTTGAAAAGTACGCCCGAGCTCGCCGGCCTGCGCCTGGCGATGGTCGATCACTACCTGCCGGCCGTCAGCGTTCGCACACTGTACCCCAAGGCGCAACTGAGCCTGTACCGCTCGACCCTGGCCGGGCTCGCTGCCGTGGCGCTGGGCGAGGCAGACGCCTATCTGGGCGATGCCATCAGCACTGACTACAT  >  NC_002947/3861429‑3861724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.