New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3877270	42 (0.860)	3 (0.060)	3/252	NT	6.7%	coding (359/1242 nt)	PP_3425	RND family transporter MFP subunit
	?	NC_002947	= 3877298	43 (0.910)					coding (387/1242 nt)	PP_3425	RND family transporter MFP subunit

GTCTCCGGCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3877119‑3877270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGATGGCGGTGGCCTTGGCCTGTTGCAGTTGGGCTTCGAGGCGGCGGACTTCAGCCTGGAACGGGCGCGGGTCGATCTGGAACAGCAGGTCGCCTTTCTTGACCTGGGCGCCTTCG  <  NC_002947/3877298‑3877151                                                                                                                                                                                                                                                                                                              GTCTTCGTCCAGATCGAACAGGTCGCCTTCACCGAAGTAGCCCATGTCAAGAAATGCGACCTGCTGTTCCAGATCGACCCTCGCCCTTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCG                                                                                                                                                         <  6:140681/149‑1                                        GCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGCTCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGAT                                                                                                                  <  5:267615/149‑1                                                                                                   AGTCCGCCGCCTCGAAGCCCAACTGCATCAGGCCAAGGCCACCGCCATCCGCAGGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGC                                                                                                                      <  8:53080/86‑1                                                                                                   AGTCCGCCGCCTCGAAGCCCAACTGCAGCAGGCCAAGGCCACCGCCATCCGCAGGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGC                                                                                                                      >  7:53080/1‑86                                                                                                                                                     GCAGGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGATGGCGGTGGCCTTGGCCTGTTGCAGTTGGGCTTCGAGGCGGCGGACTTCAGCCTGGAACGGGCGCGGGTCGATCTGGAACAGCAGGTCACCTTTCTTGACCTGGGgtgac     >  8:97023/1‑144                                                                                                                                                       AGGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGATGGCGGTGGCCTTGGCCTGTTGCAGTTGGGCTTCGAGGCGGCGGACTTCAGCCTGGAACGGGCGCGGGTCGATCTGGAACAGCAGGTCGCCTTTCTTGACCTGGGCGCCTTC   >  5:228258/1‑149                                                                                                                                                        GGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGATGGCGGTGGCCTTGGCCTGTTGCAGTTGGGCTTCGAGGCGGCGGACTTCAGCCTGGAACGGGCGCGGGTCGATCTGGAACAGCAGGTCGCCTTTCTTGACCTGGGCGCCTTCG  <  5:29445/149‑1                                                                                                                                                                                                                                                                                                              GTCTCCGGCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3877119‑3877270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagGCGCTCGCCACGGCGGGCTTCGTTGGCGCTGCGGATGGCGGTGGCCTTGGCCTGTTGCAGTTGGGCTTCGAGGCGGCGGACTTCAGCCTGGAACGGGCGCGGGTCGATCTGGAACAGCAGGTCGCCTTTCTTGACCTGGGCGCCTTCG  <  NC_002947/3877298‑3877151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.