New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3877270	42 (0.860)	3 (0.060)	3/252	NT	6.7%	coding (359/1242 nt)	PP_3425	RND family transporter MFP subunit
	?	NC_002947	= 3877298	43 (0.910)					coding (387/1242 nt)	PP_3425	RND family transporter MFP subunit

CGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCACCGCGCCCATCA  >  NC_002947/3877151‑3877446                                                                                                                                                    |                                                                                                                                                      cGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCc                                                                                                                                                      <  5:29445‑M2/149‑2 (MQ=255)  gAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCct                                                                                                                                                     >  5:228258‑M2/1‑147 (MQ=255)    gtcaccccaggtcAAGAAAGGTGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgc                                                                                                                                                   >  8:97023‑M2/6‑145 (MQ=255)         cccAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGa                                                                                                                                              >  4:169739/1‑148 (MQ=255)            aGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGTCGAGCGC‑CTGCGTGACAGc                                                                                                                                          <  2:248406/149‑1 (MQ=255)              gTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCaa                                                                                                                                        >  3:214897/1‑149 (MQ=255)                cAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACg                                                                                                                                      >  5:70841/1‑149 (MQ=255)                   gAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCa                                                                                                                                   >  5:294812/1‑149 (MQ=255)                     aaGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCAtc                                                                                                                                 >  8:276817/1‑149 (MQ=255)                     aaGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCAtc                                                                                                                                 >  4:226025/1‑149 (MQ=255)                                   ttCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTgg                                                                                                                    <  3:169739/148‑1 (MQ=255)                                   ttCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTg                                                                                                                     <  6:70841/147‑1 (MQ=255)                                     ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCACCGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGcc                                                                                                                  >  5:254383/1‑148 (MQ=255)                                     ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGcc                                                                                                                  <  7:266335/148‑1 (MQ=255)                                     ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGc                                                                                                                   >  1:8416/1‑147 (MQ=255)                                     ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGc                                                                                                                   <  2:8416/147‑1 (MQ=255)                                        gATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGGCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACCGCAACGCCATCTCCGCCGAACTGGCCGAAt                                                                                                              >  3:255845/1‑149 (MQ=255)                                             aCCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGCCAGCAACGCCATCTCCGCCGAACTGGCCGAATCgcgc                                                                                                         >  1:295639/1‑149 (MQ=255)                                              cccGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCgca                                                                                                        <  6:29445/149‑1 (MQ=255)                                                       gTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGACGAATCGCGCAGCAGTgccg                                                                                               >  8:165818/1‑149 (MQ=255)                                                          ccAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTgccgcc                                                                                             <  1:99692/148‑1 (MQ=255)                                                           cAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTgccgccgc                                                                                           >  7:185118/1‑149 (MQ=255)                                                                    gTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCg                                                                                  >  7:288417/1‑149 (MQ=255)                                                                       cgccgcCTCGAAGCCCAACTGCTACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCCCCGAACTGGCCGAATCCCGCAGCAGTGCCGCCCCCGAACCCCCTGc                                                                               >  1:171092/1‑149 (MQ=255)                                                                        gccgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATcgc                                                                                                           >  1:94258/1‑120 (MQ=255)                                                                        gccgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATcgc                                                                                                           <  2:94258/120‑1 (MQ=255)                                                                          cgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCgg                                                                            <  8:185118/149‑1 (MQ=255)                                                                             cTCGTAGCCCAACTGCAACAGGCCACGGCCACCGCCATCCGGAGCGCCATCGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACTGGAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                                                         <  2:171092/149‑1 (MQ=255)                                                                                 aaGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGAt                                                                     <  3:226025/149‑1 (MQ=255)                                                                                       aaCTGCAACAGGCCAAGGCCACCGCCATCCGCACCCCCAACGAAGCCCGCCGTCGCGAGCGC‑CTGCGAGACAGCAACACCATCACCGCCCAACTCACCGAAACGCGCACCAGTGCCGCCGCCGAAGCCAAAACCGCGCTCGAAGCCATc                                                               >  8:187437/1‑149 (MQ=255)                                                                                       aaCTGCAACACGCCAAGGCCACCGCCATCCGCATCGCCAAAGAAGCGCGCCTTGTCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTTGCCGAATCTCTGAGCAGTGCCGCCGGCGAAGCCCTTGCCGGGGTCGATGCCATc                                                               <  4:255845/149‑1 (MQ=255)                                                                                                aggccaaggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                                                         >  2:299376/1‑130 (MQ=255)                                                                                                aggccaaggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                                                         <  1:299376/130‑1 (MQ=255)                                                                                                      aggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGAc                                                <  7:276817/149‑1 (MQ=255)                                                                                                         ccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTg                                             >  6:198401/1‑149 (MQ=255)                                                                                                             cGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCTCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGgcgc                                         <  4:214897/149‑1 (MQ=255)                                                                                                                 aTCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgttgcagttgggcttcgaggcggcggacttcagcctggaacgggcgcgggtcgagctggaacagcaggtcgcctttcttgacctgggc                                      <  5:267615‑M2/149‑114 (MQ=255)                                                                                                                 aTCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCt                                     <  6:294812/149‑1 (MQ=255)                                                                                                                  tCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCt                                     >  8:204727/1‑148 (MQ=255)                                                                                                                    cGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGaa                                  >  2:266063/1‑149 (MQ=255)                                                                                                                     gCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgctgcagttgggcttcgaggcggcggact                                                                                                 >  7:53080‑M2/1‑32 (MQ=255)                                                                                                                     gCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgatgcagttgggcttcgaggcggcggact                                                                                                 <  8:53080‑M2/86‑55 (MQ=255)                                                                                                                            cAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCt                          <  7:187437/149‑1 (MQ=255)                                                                                                                             aaCGAAGCCCGCCGTGGCGAGCGCTCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCt                          >  7:192735/1‑149 (MQ=255)                                                                                                                             aaCGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCtt                         <  7:165818/149‑1 (MQ=255)                                                                                                                                gAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCAc                      >  5:167538/1‑149 (MQ=255)                                                                                                                                        ccgTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGgcgcgc                                       <  3:209164/124‑1 (MQ=255)                                                                                                                                        ccgTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGgcgcgc                                       >  4:209164/1‑124 (MQ=255)                                                                                                                                        ccgTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCa              <  5:198401/149‑1 (MQ=255)                                                                                                                                            ggCGAGCGC‑CTGCGTGACAGAAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCACcgc          >  1:148549/1‑149 (MQ=255)                                                                                                                                                   gc‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCACCGCGCCCAt    >  3:26732/1‑148 (MQ=255)                                                                                                                                                    c‑cTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCACCGCGCCCATCa  <  6:167538/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGC‑CTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTCAGCTTCACCCGCGTCACCGCGCCCATCA  >  NC_002947/3877151‑3877446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.