New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3877270	42 (0.860)	3 (0.060)	3/252	NT	6.7%	coding (359/1242 nt)	PP_3425	RND family transporter MFP subunit
	?	NC_002947	= 3877298	43 (0.910)					coding (387/1242 nt)	PP_3425	RND family transporter MFP subunit

GCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTC  >  NC_002947/3877126‑3877418                                                                                                                                                 |                                                                                                                                                     gCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCTACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgcgc                                                                                                                                                   >  6:228258/1‑148 (MQ=255) gCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgcgc                                                                                                                                                   >  4:289920/1‑148 (MQ=255)  ccAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgcgc                                                                                                                                                   <  4:65185/147‑1 (MQ=255)         gACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAg                                                                                                                                           <  2:240152/148‑1 (MQ=255)                tCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGt                                                                                                                                   <  3:289920/149‑1 (MQ=255)                  gCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACATGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTg                                                                                                                                  <  1:9013/148‑1 (MQ=255)                    cTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTgtc                                                                                                                                >  1:248406/1‑146 (MQ=255)                    cTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGc                                                                                                                                >  8:266335/1‑148 (MQ=255)                          cGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCc                                                                                                                         <  5:29445‑M2/149‑2 (MQ=255)                           gAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCct                                                                                                                        >  5:228258‑M2/1‑147 (MQ=255)                             gtcaccccaggtcAAGAAAGGTGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgc                                                                                                                      >  8:97023‑M2/6‑145 (MQ=255)                                 gcCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGCTCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGgcgctcgccacggcgggcttcgttggcgctgcggat                                                                                                                  <  5:267615‑M1/149‑37 (MQ=255)                                  cccAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGa                                                                                                                  >  4:169739/1‑148 (MQ=255)                                     aGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGTCGAGCGCCTGCGTGACAGc                                                                                                              <  2:248406/149‑1 (MQ=255)                                       gTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCaa                                                                                                            >  3:214897/1‑149 (MQ=255)                                         cAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACg                                                                                                          >  5:70841/1‑149 (MQ=255)                                            gAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCa                                                                                                       >  5:294812/1‑149 (MQ=255)                                              aaGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCAtc                                                                                                     >  8:276817/1‑149 (MQ=255)                                              aaGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCAtc                                                                                                     >  4:226025/1‑149 (MQ=255)                                                            ttCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTgg                                                                                        <  3:169739/148‑1 (MQ=255)                                                            ttCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTg                                                                                         <  6:70841/147‑1 (MQ=255)                                                              ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCACCGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGcc                                                                                      >  5:254383/1‑148 (MQ=255)                                                              ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGcc                                                                                      <  7:266335/148‑1 (MQ=255)                                                              ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGc                                                                                       <  2:8416/147‑1 (MQ=255)                                                              ccAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGc                                                                                       >  1:8416/1‑147 (MQ=255)                                                               cAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGc                                                                                                                                          >  1:291455/1‑95 (MQ=255)                                                               cAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGc                                                                                                                                          <  2:291455/95‑1 (MQ=255)                                                                 gATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGGCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACCGCAACGCCATCTCCGCCGAACTGGCCGAAt                                                                                  >  3:255845/1‑149 (MQ=255)                                                                      aCCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGCCAGCAACGCCATCTCCGCCGAACTGGCCGAATCgcgc                                                                             >  1:295639/1‑149 (MQ=255)                                                                       cccGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCgca                                                                            <  6:29445/149‑1 (MQ=255)                                                                                gTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGACGAATCGCGCAGCAGTgccg                                                                   >  8:165818/1‑149 (MQ=255)                                                                                   ccAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTgccgcc                                                                 <  1:99692/148‑1 (MQ=255)                                                                                    cAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTgccgccgc                                                               >  7:185118/1‑149 (MQ=255)                                                                                            aGTCCGCCGCCTCGAAGCCCAACTGCATCAGGCCAAGGCCACCGCCATCCGCAGgcgctcgccacggcgggcttcgttggcgctgc                                                                                                                      <  8:53080‑M1/86‑33 (MQ=255)                                                                                            aGTCCGCCGCCTCGAAGCCCAACTGCAGCAGGCCAAGGCCACCGCCATCCGCAGgcgctcgccacggcgggcttcgttggcgctgc                                                                                                                      >  7:53080‑M1/1‑54 (MQ=255)                                                                                             gTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCg                                                      >  7:288417/1‑149 (MQ=255)                                                                                                cgccgcCTCGAAGCCCAACTGCTACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCCCCGAACTGGCCGAATCCCGCAGCAGTGCCGCCCCCGAACCCCCTGc                                                   >  1:171092/1‑149 (MQ=255)                                                                                                 gccgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATcgc                                                                               >  1:94258/1‑120 (MQ=255)                                                                                                 gccgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATcgc                                                                               <  2:94258/120‑1 (MQ=255)                                                                                                   cgccTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCgg                                                <  8:185118/149‑1 (MQ=255)                                                                                                      cTCGTAGCCCAACTGCAACAGGCCACGGCCACCGCCATCCGGAGCGCCATCGAAGCCCGCCGTGGCGAGCGCCTGCGTGACTGGAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                             <  2:171092/149‑1 (MQ=255)                                                                                                          aaGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGAt                                         <  3:226025/149‑1 (MQ=255)                                                                                                                aaCTGCAACAGGCCAAGGCCACCGCCATCCGCACCCCCAACGAAGCCCGCCGTCGCGAGCGCCTGCGAGACAGCAACACCATCACCGCCCAACTCACCGAAACGCGCACCAGTGCCGCCGCCGAAGCCAAAACCGCGCTCGAAGCCATc                                   >  8:187437/1‑149 (MQ=255)                                                                                                                aaCTGCAACACGCCAAGGCCACCGCCATCCGCATCGCCAAAGAAGCGCGCCTTGTCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTTGCCGAATCTCTGAGCAGTGCCGCCGGCGAAGCCCTTGCCGGGGTCGATGCCATc                                   <  4:255845/149‑1 (MQ=255)                                                                                                                         aggccaaggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                             <  1:299376/130‑1 (MQ=255)                                                                                                                         aggccaaggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGt                                             >  2:299376/1‑130 (MQ=255)                                                                                                                               aggccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGAc                    <  7:276817/149‑1 (MQ=255)                                                                                                                                  ccaCCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTg                 >  6:198401/1‑149 (MQ=255)                                                                                                                                      cGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCTCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGgcgc             <  4:214897/149‑1 (MQ=255)                                                                                                                                          aTCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgttgcagttgggcttcgaggcggcggacttcagcctggaacgggcgcgggtcgagctggaacagcaggtcgcctttcttgacctgggc         <  5:267615‑M2/149‑114 (MQ=255)                                                                                                                                          aTCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCt         <  6:294812/149‑1 (MQ=255)                                                                                                                                           tCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCt         >  8:204727/1‑148 (MQ=255)                                                                                                                                             cGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGaa      >  2:266063/1‑149 (MQ=255)                                                                                                                                              gCAGgcgctcgccacggcgggcttcgttggcgctgcggatggcggtggccttggcctgttgcagttgggcttcgaggcggcggacttcagcctggaacgggcgcgggtcgatctggaacagcaggtcacctttcttgacctggggtgac     >  8:97023‑M1/1‑4 (MQ=255)                                                                                                                                              gCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgctgcagttgggcttcgaggcggcggact                                                                    >  7:53080‑M2/1‑32 (MQ=255)                                                                                                                                              gCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCctgcggatggcggtggccttggcctgatgcagttgggcttcgaggcggcggact                                                                    <  8:53080‑M2/86‑55 (MQ=255)                                                                                                                                                aGgcgctcgccacggcgggcttcgttggcgctgcggatggcggtggccttggcctgttgcagttgggcttcgaggcggcggacttcagcctggaacgggcgcgggtcgatctggaacagcaggtcgcctttcttgacctgggcgccttc   >  5:228258‑M1/1‑2 (MQ=255)                                                                                                                                                 ggcgctcgccacggcgggcttcgttggcgctgcggatggcggtggccttggcctgttgcagttgggcttcgaggcggcggacttcagcctggaacgggcgcgggtcgatctggaacagcaggtcgcctttcttgacctgggcgccttcg  <  5:29445‑M1/149‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCCAGATCGACCAGGTCGCCTTCACCGAAGGCGCCCAGGTCAAGAAAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCGCCTGCGTGACAGCAACGCCATCTCCGCCGAACTGGCCGAATCGCGCAGCAGTGCCGCCGCCGAAGCCCGTGCCGGGGTCGATGCCATCCAGGCCCAGCTCGACCTGGCGCGCCTGAACCTC  >  NC_002947/3877126‑3877418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.