| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3910501 = | 36 (0.740) | 3 (0.060) | 3/252 | NT | 7.7% | coding (2450/2640 nt) | PP_3450 | TPR repeat‑containing protein |
| ? | NC_002947 | 3910541 = | 37 (0.790) | coding (2490/2640 nt) | PP_3450 | TPR repeat‑containing protein | |||||
CGCGCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3910653‑3910501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGACC > NC_002947/3910541‑3910685 CGCGCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTG < 2:185036/149‑1 CGCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAAGCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGG < 7:214404/149‑1 CGCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGG < 7:196396/149‑1 GCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGG > 6:268479/1‑149 ACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTAC > 1:183329/1‑146 ACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTAC < 2:183329/146‑1 CCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGAGCGCTACAACGCCTACCGCGGATCGCTGAAAGTGCGTGCCGAGTACCAGCTATCGCCGGGCGGTCACCTCTACGAGC > 6:311074/1‑149 GGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGACC > 8:230130/1‑149 GGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAAATGACC < 1:155329/149‑1 CGCGCTCGTAGAGGTTACCGCCCAGCGATTGCTGGTACTCGGCACGCACTTTCAGCGAGCCGCGGTAGGCGTTGTAGCGGTCGTCGTCGAACCACCATTGCCAGCGCACGCCAACCCCGGCGCGGGCGTCCTGGCGCCAGTCGTTGCTGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3910653‑3910501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGACC > NC_002947/3910541‑3910685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |