New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3910501 =	36 (0.740)	3 (0.060)	3/252	NT	7.7%	coding (2450/2640 nt)	PP_3450	TPR repeat‑containing protein
	?	NC_002947	3910541 =	37 (0.790)					coding (2490/2640 nt)	PP_3450	TPR repeat‑containing protein

TTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCG  >  NC_002947/3910356‑3910635                                                                                                                                                  |                                                                                                                                       ggtcatttccgcaccgaccagcacaccgttggcgcgctcgtagaggttaccgcccagcgattgctggtactcggcacgcactttcagcgagccgcggtaggcgttgtagcggtcgtcgtcgaaccaccattgccagcgcacgccaAccc                                                                                                                                     <  1:155329‑M1/4‑1 (MQ=255) ggtcatctccgcaccgaccagcacaccgttggcgcgctcgtagaggttaccgcccagcgattgctggtactcggcacgcactttcagcgagccgcggtaggcgttgtagcggtcgtcgtcgaaccaccattgccagcgcacgccaAccc                                                                                                                                     >  8:230130‑M1/146‑149 (MQ=255)    ctctACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCa                                                                                                                                   <  1:41935/148‑1 (MQ=255)    ctctACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAg                                                                                                                                  >  3:84706/1‑149 (MQ=255)            cGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACt                                                                                                                          >  8:57217/1‑149 (MQ=255)                gctgcCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGgcg                                                                                                                      >  6:48954/1‑149 (MQ=255)                                  gcCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                                                    <  8:241297/149‑1 (MQ=255)                                  gcCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                                                    <  7:57217/149‑1 (MQ=255)                                   ccGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                                                   <  4:189400/149‑1 (MQ=255)                                    gctcgtagaggtgaccgcccggcgatagctggtactcggcacgcactttcagcgatccgcggtaggcgttgtagcgctcgtcgtcgaaccaccattgccagcgcacgccaACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgggg                                                                                                  >  6:311074‑M1/111‑149 (MQ=255)                                     ggcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGt                                                                                                 >  2:155329‑M2/67‑149 (MQ=255)                                      gcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                                                   <  8:48312‑M2/81‑1 (MQ=255)                                      gcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                                                   >  7:48312‑M2/66‑146 (MQ=255)                                        gtagaggttaccgcccagcgattgctggtactcggcacgcactttcagcgagccgcggtaggcgttgtagcggtcgtcgtcgaaccaccattgccagcgcacgccaACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGt                                                                                                 <  2:183329‑M1/40‑1 (MQ=255)                                        gtagaggttaccgcccagcgattgctggtactcggcacgcactttcagcgagccgcggtaggcgttgtagcggtcgtcgtcgaaccaccattgccagcgcacgccaACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGt                                                                                                 >  1:183329‑M1/107‑146 (MQ=255)                                         ACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCACCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGc                                                                                             >  6:217457‑M1/1‑149 (MQ=255)                                          ccATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCg                                                                                            >  3:94640/1‑149 (MQ=255)                                              gCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                                                    >  5:225652/1‑137 (MQ=255)                                              gCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                                                    <  6:225652/137‑1 (MQ=255)                                                   gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                   <  4:84706/149‑1 (MQ=255)                                                   gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                   <  5:48954/149‑1 (MQ=255)                                                    cTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                   >  7:264828/1‑148 (MQ=255)                                                         gcgcTACCAGCAGGGCCACGCTTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAAtgg                                                                              <  6:310823/148‑1 (MQ=255)                                                             tACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGtt                                                                         >  1:223323/1‑149 (MQ=255)                                                                        ccACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGAcc                                                              >  5:93044/1‑149 (MQ=255)                                                                            gCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTa                                                          <  4:94640/149‑1 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                   >  1:183006/1‑122 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                   <  2:183006/122‑1 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                    <  5:53289/137‑1 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                    >  6:53289/1‑137 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                    >  6:48582/1‑137 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                    <  5:48582/137‑1 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTAc                                                         >  5:306382/1‑148 (MQ=255)                                                                              cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACa                                                        <  8:264828/149‑1 (MQ=255)                                                                               tGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACaa                                                       >  8:34969/1‑149 (MQ=255)                                                                                ggAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAAc                                                      >  4:301025/1‑149 (MQ=255)                                                                                           ggCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCgg                                           <  6:306382/149‑1 (MQ=255)                                                                                                cTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGc                                      >  3:141280/1‑149 (MQ=255)                                                                                                    ccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGa                                   >  5:268479‑M2/4‑148 (MQ=255)                                                                                                       cAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAgt                               <  3:301025/149‑1 (MQ=255)                                                                                                         aaCCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAgtgc                             <  2:223323/149‑1 (MQ=255)                                                                                                                   cccTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGt                    <  6:93044/148‑1 (MQ=255)                                                                                                                                    gTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg  >  4:213080/1‑149 (MQ=255)                                                                                                                                    gTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg  <  6:189096/149‑1 (MQ=255)                                                                                                                                            gccagGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg  >  4:40812/1‑141 (MQ=255)                                                                                                                                            gccagGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg  <  3:40812/141‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                       TTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCG  >  NC_002947/3910356‑3910635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.