New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3910501 =	36 (0.740)	3 (0.060)	3/252	NT	7.7%	coding (2450/2640 nt)	PP_3450	TPR repeat‑containing protein
	?	NC_002947	3910541 =	37 (0.790)					coding (2490/2640 nt)	PP_3450	TPR repeat‑containing protein

ACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGACC  >  NC_002947/3910396‑3910685                                                                                                                                                  |                                                                                                                                                 ACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCACCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGc                                                                                                                                               >  6:217457‑M1/1‑149 (MQ=255)  ccATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCg                                                                                                                                              >  3:94640/1‑149 (MQ=255)           gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                                                                     <  5:48954/149‑1 (MQ=255)           gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                                                                     <  4:84706/149‑1 (MQ=255)            cTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                                                                     >  7:264828/1‑148 (MQ=255)                 gcgcTACCAGCAGGGCCACGCTTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAAtgg                                                                                                                                <  6:310823/148‑1 (MQ=255)                     tACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGtt                                                                                                                           >  1:223323/1‑149 (MQ=255)                                ccACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGAcc                                                                                                                >  5:93044/1‑149 (MQ=255)                                    gCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTa                                                                                                            <  4:94640/149‑1 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                                                                     >  1:183006/1‑122 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                                                                                                     <  2:183006/122‑1 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                                                                      >  6:53289/1‑137 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                                                                      >  6:48582/1‑137 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                                                                      <  5:53289/137‑1 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                                                                                                      <  5:48582/137‑1 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTAc                                                                                                           >  5:306382/1‑148 (MQ=255)                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACa                                                                                                          <  8:264828/149‑1 (MQ=255)                                       tGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACaa                                                                                                         >  8:34969/1‑149 (MQ=255)                                        ggAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAAc                                                                                                        >  4:301025/1‑149 (MQ=255)                                                   ggCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCgg                                                                                             <  6:306382/149‑1 (MQ=255)                                                        cTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGc                                                                                        >  3:141280/1‑149 (MQ=255)                                                            ccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGa                                                                                     >  5:268479‑M2/4‑148 (MQ=255)                                                               cAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAgt                                                                                 <  3:301025/149‑1 (MQ=255)                                                                 aaCCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAgtgc                                                                               <  2:223323/149‑1 (MQ=255)                                                                           cccTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGt                                                                      <  6:93044/148‑1 (MQ=255)                                                                                            gTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg                                                    <  6:189096/149‑1 (MQ=255)                                                                                            gTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg                                                    >  4:213080/1‑149 (MQ=255)                                                                                                    gccagGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg                                                    <  3:40812/141‑1 (MQ=255)                                                                                                    gccagGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCg                                                    >  4:40812/1‑141 (MQ=255)                                                                                                          accccggcgcgggcgtcctggcgccagtcgttgctggggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTAc                                         <  2:183329‑M2/106‑1 (MQ=255)                                                                                                          accccggcgcgggcgtcctggcgccagtcgttgctggggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTAc                                         >  1:183329‑M2/41‑146 (MQ=255)                                                                                                           ccccggcgcgggcgtcctggcgccagtcgttgctggggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGAGCGCTACAACGCCTACCGCGGATCGCTGAAAGTGCGTGCCGAGTACCAGCTATCGCCGGGCGGTCACCTCTACGAgc                                     >  6:311074‑M2/40‑149 (MQ=255)                                                                                                           CCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgc                                     >  6:268479‑M1/1‑149 (MQ=255)                                                                                                            CCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgcg                                    <  7:196396‑M1/149‑1 (MQ=255)                                                                                                            CCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGCTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgcg                                    <  7:214404‑M1/149‑1 (MQ=255)                                                                                                             cttggaaCGACTGGCGCCAGGTCGCGCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGACTACCGGGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgcgc                                   <  8:214404/144‑1 (MQ=255)                                                                                                              CAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgcgcg                                  <  2:185036‑M1/149‑1 (MQ=255)                                                                                                               aGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGTGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAgcgcgc                                 <  2:129011/149‑1 (MQ=255)                                                                                                                   aCGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTAcc                                                                   <  3:159362/111‑1 (MQ=255)                                                                                                                   aCGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTAcc                                                                   >  4:159362/1‑111 (MQ=255)                                                                                                                      aCTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGgt                          <  1:185036/149‑1 (MQ=255)                                                                                                                            gcCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTg                    >  3:196729/1‑149 (MQ=255)                                                                                                                                     cccGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCg           <  3:213080/149‑1 (MQ=255)                                                                                                                                      ccGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCg                <  3:227302/143‑1 (MQ=255)                                                                                                                                      ccGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCg                >  4:227302/1‑143 (MQ=255)                                                                                                                                       cgcgCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGga         <  7:34969/149‑1 (MQ=255)                                                                                                                                       cgcgCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGga         <  4:196729/149‑1 (MQ=255)                                                                                                                                              gggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGAcc  >  8:230130‑M2/5‑149 (MQ=255)                                                                                                                                              gggtTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAAATGAcc  <  1:155329‑M2/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 ACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGTGCGTGCCGAGTACCAGCAATCGCTGGGCGGTAACCTCTACGAGCGCGCCAACGGTGTGCTGGTCGGTGCGGAGATGACC  >  NC_002947/3910396‑3910685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.