New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3926334 =	28 (0.570)	3 (0.060)	3/256	NT	9.6%	coding (157/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
	?	NC_002947	3926390 =	29 (0.610)					coding (101/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha

CTGCTGTACCAAAGCGTGCGAAAACGATAAGAACAACAACCGTGGAGGTCTGACCTTGAAGACGACTCGACTCCGGCGGCATGCGGGCAAACTGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3926482‑3926334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGTT  >  NC_002947/3926390‑3926536                                                                                                                                                                                                                                                                                                          CTGCTGTACCAAAGCGTGCGAAAACGATAAGAACAACAACCGTGGAGGTCTGACCTTGAAGACGACTCGACTCCGGCGGCATGCGGGCAAACTGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGag                                                                                                                                                     >  8:123619/1‑147    CTGTACCAAAGCGTGCGAAAACGATAAGAACAACAACCGTGGAGGTCTGACCTTGAAGACGACTCGACTCCGGCGGCATGCGGGCAAACTGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGC                                                                                                                                                      <  3:36960/145‑1    CTGTACCAAAGCGTGCGAAAACGATAAGAACAACAACCGTGGAGGTCTGACCTTGAAGACGACTCGACTCCGGCGGCATGCGGGCAAACTGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGC                                                                                                                                                      >  4:36960/1‑145                                                                                             TGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTAT                                                                                  <  3:110495/124‑1                                                                                             TGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTAT                                                                                  >  4:110495/1‑124                                                                                               GCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGG                                                       >  4:1103/1‑149                                                                                                                                                    CCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGTT  <  5:223597/149‑1                                                                                                                                                                                                                                                                                                          CTGCTGTACCAAAGCGTGCGAAAACGATAAGAACAACAACCGTGGAGGTCTGACCTTGAAGACGACTCGACTCCGGCGGCATGCGGGCAAACTGGCGCTGGTCGCCGCCGCGCTGCTGAGCACCCAGGCCATGGCGGCCGAGCAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3926482‑3926334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGTT  >  NC_002947/3926390‑3926536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.