New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3926334 =	28 (0.570)	3 (0.060)	3/256	NT	9.6%	coding (157/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
	?	NC_002947	3926390 =	29 (0.610)					coding (101/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha

GCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTA  >  NC_002947/3926188‑3926476                                                                                                                                                    |                                                                                                                                               aacgcttttaccctaactggcacagttcctgtatcacaaccgtcacatgcacacctgctgtaccaaagcgtgcgaaaacgataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactgg                                                                                                                                               <  5:223597‑M1/2‑1 (MQ=255)     aTCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGccc                                                                                                                                            <  1:222787/148‑1 (MQ=255)         gAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCg                                                                                                                                      >  7:135583/1‑149 (MQ=255)         gAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCg                                                                                                                                      >  7:46040/1‑149 (MQ=255)            ggCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGgcc                                                                                                                                   <  7:182396/149‑1 (MQ=255)              atgagCATCGCCCGCATGCAGGTGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGAGGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGgccgc                                                                                                                                 >  6:256768/5‑149 (MQ=255)                  gCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATg                                                                                                                             >  3:45348/1‑149 (MQ=255)                   cATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATg                                                                                                                             <  8:46040/148‑1 (MQ=255)                            cATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTg                                                                                                                    <  8:135583/148‑1 (MQ=255)                               gCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCAGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCCGTTGTGCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCt                                                                                                                  >  6:167840/1‑147 (MQ=255)                                                      cctgctgtaccaaagcgtgcgaaaacgataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAgcgc                                                                                          >  4:1103‑M1/95‑149 (MQ=255)                                                         ccGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                        <  5:256768/147‑1 (MQ=255)                                                               tCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGccc                                                                                >  4:130698/1‑149 (MQ=255)                                                                 ttGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCg                                                                               >  4:143681/1‑148 (MQ=255)                                                                       tggtggCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATgccg                                                                        >  6:313602/1‑149 (MQ=255)                                                                         gtggCTGATGCGGCTATAGGTGTCGTTTCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACATGCTCGGTCCCTGCTCGTCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATgccgcc                                                                      <  5:167840/149‑1 (MQ=255)                                                                                 ataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                        >  4:110495‑M1/68‑124 (MQ=255)                                                                                 ataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                        <  3:110495‑M1/57‑1 (MQ=255)                                                                                            gtgtCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTc                                                     >  6:223597/1‑147 (MQ=255)                                                                                               tCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGgagtcg                                                               >  7:242414/1‑134 (MQ=255)                                                                                               tCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGgagtcg                                                               <  8:242414/134‑1 (MQ=255)                                                                                                             ggATATGGCACCCCATGCACTTGTTCTGCAAGAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACgg                                   <  3:130698/149‑1 (MQ=255)                                                                                                                   ggCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                >  8:97482/1‑146 (MQ=255)                                                                                                                   ggCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                <  7:97482/146‑1 (MQ=255)                                                                                                                             gCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCAGGAGTCGAGTCGTCTTCAAGGTCAGAACTCCACGGTTGTTNTTCTTATCGt                   >  6:240238/1‑149 (MQ=255)                                                                                                                                 ttGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTc               >  4:92189/1‑149 (MQ=255)                                                                                                                                        gCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCt        >  4:218427/1‑149 (MQ=255)                                                                                                                                        gCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCt        >  4:141969/1‑149 (MQ=255)                                                                                                                                         cAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCtt       >  3:37877/1‑149 (MQ=255)                                                                                                                                          aaCAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCGTATCGTTTTCGCACGCttt      >  7:140704/1‑149 (MQ=255)                                                                                                                                            cAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGt                                                <  4:268366/105‑1 (MQ=255)                                                                                                                                            cAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGt                                                >  3:268366/1‑105 (MQ=255)                                                                                                                                              ggCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTa  <  3:141969/149‑1 (MQ=255)                                                                                                                                               gCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACg                                    >  2:257627/1‑114 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATCAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTT‑CGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTA  >  NC_002947/3926188‑3926476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.