New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3926334 =	28 (0.570)	3 (0.060)	3/256	NT	9.6%	coding (157/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
	?	NC_002947	3926390 =	29 (0.610)					coding (101/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha

CCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGTT  >  NC_002947/3926244‑3926536                                                                                                                                                   |                                                                                                                                                   ccGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                                                                                    <  5:256768/147‑1 (MQ=255)       tCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGccc                                                                                                                                            >  4:130698/1‑149 (MQ=255)         ttGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCg                                                                                                                                           >  4:143681/1‑148 (MQ=255)               tggtggCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATgccg                                                                                                                                    >  6:313602/1‑149 (MQ=255)                 gtggCTGATGCGGCTATAGGTGTCGTTTCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACATGCTCGGTCCCTGCTCGTCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATgccgcc                                                                                                                                  <  5:167840/149‑1 (MQ=255)                        ataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                                                                                    <  3:110495‑M1/57‑1 (MQ=255)                        ataagaacaacaaccgtggaggtctgaccttgaagacgactcgactccggcggcatgcgggcaaactGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCa                                                                                                                                                    >  4:110495‑M1/68‑124 (MQ=255)                                    gtgtCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTc                                                                                                                 >  6:223597/1‑147 (MQ=255)                                       tCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGgagtcg                                                                                                                           <  8:242414/134‑1 (MQ=255)                                       tCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGgagtcg                                                                                                                           >  7:242414/1‑134 (MQ=255)                                                    ggATATGGCACCCCATGCACTTGTTCTGCAAGAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACgg                                                                                               <  3:130698/149‑1 (MQ=255)                                                          ggCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                                                                            >  8:97482/1‑146 (MQ=255)                                                          ggCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                                                                            <  7:97482/146‑1 (MQ=255)                                                                    gCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCAGGAGTCGAGTCGTCTTCAAGGTCAGAACTCCACGGTTGTTNTTCTTATCGt                                                                               >  6:240238/1‑149 (MQ=255)                                                                        ttGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTc                                                                           >  4:92189/1‑149 (MQ=255)                                                                               gCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCt                                                                    >  4:141969/1‑149 (MQ=255)                                                                               gCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCt                                                                    >  4:218427/1‑149 (MQ=255)                                                                                cAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCtt                                                                   >  3:37877/1‑149 (MQ=255)                                                                                 aaCAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCGTATCGTTTTCGCACGCttt                                                                  >  7:140704/1‑149 (MQ=255)                                                                                   cAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGt                                                                                                            <  4:268366/105‑1 (MQ=255)                                                                                   cAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGt                                                                                                            >  3:268366/1‑105 (MQ=255)                                                                                     ggCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTa                                                              <  3:141969/149‑1 (MQ=255)                                                                                      gCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACg                                                                                                >  2:257627/1‑114 (MQ=255)                                                                                          tggcgctggtcgccgccgcgctgctgagcacccaggccatggcggccgagcagggccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTAt                                                                                  >  4:110495‑M2/58‑124 (MQ=255)                                                                                          tggcgctggtcgccgccgcgctgctgagcacccaggccatggcggccgagcagggccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTAt                                                                                  <  3:110495‑M2/67‑1 (MQ=255)                                                                                           ctCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTAcagcag                                                        >  8:123619‑M1/3‑149 (MQ=255)                                                                                            gcgctggtcgccgccgcgctgctgagcacccaggccatggcggccgagcagggccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAgg                                                       >  4:1103‑M2/56‑149 (MQ=255)                                                                                            GCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTAcag                                                           <  3:36960‑M1/145‑1 (MQ=255)                                                                                            GCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTAcag                                                           >  4:36960‑M1/1‑145 (MQ=255)                                                                                                               gCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTtgt                                     <  5:313602/148‑1 (MQ=255)                                                                                                                    ggTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACa                               <  3:92189/149‑1 (MQ=255)                                                                                                                            gcagcGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACtgt                       >  8:134177/1‑149 (MQ=255)                                                                                                                              agcGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGc                     >  5:263990/1‑149 (MQ=255)                                                                                                                               gcgcGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                                                                            >  6:232477/1‑77 (MQ=255)                                                                                                                               gcgcGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGgttg                                                                                            <  5:232477/77‑1 (MQ=255)                                                                                                                               gcgcGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGcc                    <  3:218427/149‑1 (MQ=255)                                                                                                                                    gcggcgACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTa               <  7:134177/149‑1 (MQ=255)                                                                                                                                       gcgACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAggg            <  3:143681/149‑1 (MQ=255)                                                                                                                                                 ccAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGtt  <  5:223597‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCATGCCGCCGGAGTCGAGTCGTCTTCAAGGTCAGACCTCCACGGTTGTTGTTCTTATCGTTTTCGCACGCTTTGGTACAGCAGGTGTGCATGTGACGGTTGTGATACAGGAACTGTGCCAGTTAGGGTAAAAGCGTT  >  NC_002947/3926244‑3926536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.